Non-Coding RNA Search

Ss1.1-Pig3-SRG8026C14.5

Sequence:


               
               GGACCACGCAGAGGAAGGGACCTCGGAAGACGGAACAAAAGCTGATGAGAAGAGTTCTGA
CCAAGGACTGCAGAAGGTGGGAGATTCTGATGGAAACAGCAATCTCGATGGTAAAAAAGA
GGATGAAGACCCTCAGGATGGAGGGTCCCTTGCCTCAACGTTATCTAAATTAAAAAGAAT
GAAGCGAGAAGAAGGAGCTGGAGCTACAGAGCCGGAGTATTACCACTACATCCCCCCAGC
ACACTGCAAAGTCAAACCTAATTTTCCTTTCCTACTCTTCATGAGAGCCAGTGAACAAAT
GGAAGGTGACAGTAGTACACACCCAAAGAATGCCCTAGAGAGCAAAAAAAGTAGTTCTCC
CAAACCTAAAGGCTGTATCAAGGTGGCAGCAAGCCAAGGAGCAGAAAAGACAGTTAGTGA
AGTCTCCGAGCAGCAGATGGAAACTAGTGTGGCTGAGCCCTCGGAGCCTGGAAGCAAATC
TGAGACAAAGAAGTCTTCAGGAGGGGATGCAAGTGAGCACAGTCTAGAGAGTCAGAAGGA
TGCAGAGATCCAAATATGTGAGTCTAACCCACCTAAAGAAACCTCTCAGGCCTCTCCAGC
ACGGAAAGATAGCCAGGAGGGACCCAAACATCCTACTGGTCCCTTCTTTCCAGTTTTGAG
CAAAGATGAAAGCACTGCCCTCCAGTGGCCATCAGAACTATTAATTTTCACGAAGGCAGA
ACCCTCCATTTCATACAGTTGTAATCCTTTGTACTTTGACTTTAAGCTTTCAAGGAACAA
AGATGCCAGAGCTAAAGGGACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCACGCAGAGGAAGGGACCTCGGAAGACGGAACAAAAGCTGATGAGAAGAGTTCTGA
CCAAGGACTGCAGAAGGTGGGAGATTCTGATGGAAACAGCAATCTCGATGGTAAAAAAGA
GGATGAAGACCCTCAGGATGGAGGGTCCCTTGCCTCAACGTTATCTAAATTAAAAAGAAT
GAAGCGAGAAGAAGGAGCTGGAGCTACAGAGCCGGAGTATTACCACTACATCCCCCCAGC
ACACTGCAAAGTCAAACCTAATTTTCCTTTCCTACTCTTCATGAGAGCCAGTGAACAAAT
GGAAGGTGACAGTAGTACACACCCAAAGAATGCCCTAGAGAGCAAAAAAAGTAGTTCTCC
CAAACCTAAAGGCTGTATCAAGGTGGCAGCAAGCCAAGGAGCAGAAAAGACAGTTAGTGA
AGTCTCCGAGCAGCAGATGGAAACTAGTGTGGCTGAGCCCTCGGAGCCTGGAAGCAAATC
TGAGACAAAGAAGTCTTCAGGAGGGGATGCAAGTGAGCACAGTCTAGAGAGTCAGAAGGA
TGCAGAGATCCAAATATGTGAGTCTAACCCACCTAAAGAAACCTCTCAGGCCTCTCCAGC
ACGGAAAGATAGCCAGGAGGGACCCAAACATCCTACTGGTCCCTTCTTTCCAGTTTTGAG
CAAAGATGAAAGCACTGCCCTCCAGTGGCCATCAGAACTATTAATTTTCACGAAGGCAGA
ACCCTCCATTTCATACAGTTGTAATCCTTTGTACTTTGACTTTAAGCTTTCAAGGAACAA
AGATGCCAGAGCTAAAGGGACAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-319, - strand, RNAz p=0.969359
               

               
               360-479, + strand, RNAz p=0.930238

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-319, - strand, RNAz p=0.969359
               

               
               360-479, + strand, RNAz p=0.930238

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr19 (37870591-37871400)
               

               
               1-804, gnl|Hg17|chr17 (39834011-39833202)
               

               
               1-804, gnl|Mm7|chr11 (102590790-102589993)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr19 (37870591-37871400)
               

               
               1-804, gnl|Hg17|chr17 (39834011-39833202)
               

               
               1-804, gnl|Mm7|chr11 (102590790-102589993)

	1-319, - strand, RNAz p=0.969359
	360-479, + strand, RNAz p=0.930238

	1-804, gnl\|bosTau2\|chr19 (37870591-37871400)
	1-804, gnl\|Hg17\|chr17 (39834011-39833202)
	1-804, gnl\|Mm7\|chr11 (102590790-102589993)