Non-Coding RNA Search

Ss1.1-Pig3-SRG8026E12.5

Sequence:


               
               ATTATGGAGTAGAAAGGAATTTGGAGTAAATTTGAATATTTTTAAGTACCTAGTGTTTTT
TCCTCTGACCAATCAAATTTATTATAAAGAAGGGATTGAATATGTAATTTTAAGTTTCTG
AGTAAAAATTCAAATTACTTTCCAAATTCATTTCCAAAAATCTTCCAAGCTGGCAGTTAA
CTACAAAACTCATTTGATTTTTGTAGTTTGCCATGTATGGGATGATTTCTGCTACTCCTT
ACTACCTGTGCCATTGTGTTTATGTTGATTGTATGGCTTATTCACTTTGGGTTCTTCATG
AGCTGTATAGACATTTTGGTATTTATATTTATTACATTATTGTCTGATATTTTAATATTG
TCAAATGTTTGCTATAGCTTTTGACGTTACTTTTTATAGCCCTCTTATTTTTATAGAGCA
ATGAAAGTTTTGGCTTTAAAAGAAGTAGTGTCTTTCTCATATGGTCAAATATTTCTTCTT
TATGATATGCTGATATTTCATCTTTTTTCTGTAATTCTCTATTATTACTTATTTTTAATG
TTTTTCCTATCATTTTGAAAAACTTAAGTGTCCGTTCTTCATTTGAAAATGAGCTAAAAG
TACTACCCCAAATAAATATGTAGAAACAATTGCTATAAAAGTGTCAGCGTAGTTTACAGC
AATGTATTATTATCTTAATGACTACAGATACATATATACACATATATATTCCATATATGT
ATATACATGTATTTTTTTTCAGGTTGTTGGAATTAAGATGCATCTATAACAATAGTACAG
TTCCTGTAAAAAATATTTGAAATGTTTCATGAACATTATATATCTACACATCAGAAATTC
TTTTCGCAACTTCATACATAATCATTTTAAGATCTTTTGAAATAAATAATGCAAATGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATGGAGTAGAAAGGAATTTGGAGTAAATTTGAATATTTTTAAGTACCTAGTGTTTTT
TCCTCTGACCAATCAAATTTATTATAAAGAAGGGATTGAATATGTAATTTTAAGTTTCTG
AGTAAAAATTCAAATTACTTTCCAAATTCATTTCCAAAAATCTTCCAAGCTGGCAGTTAA
CTACAAAACTCATTTGATTTTTGTAGTTTGCCATGTATGGGATGATTTCTGCTACTCCTT
ACTACCTGTGCCATTGTGTTTATGTTGATTGTATGGCTTATTCACTTTGGGTTCTTCATG
AGCTGTATAGACATTTTGGTATTTATATTTATTACATTATTGTCTGATATTTTAATATTG
TCAAATGTTTGCTATAGCTTTTGACGTTACTTTTTATAGCCCTCTTATTTTTATAGAGCA
ATGAAAGTTTTGGCTTTAAAAGAAGTAGTGTCTTTCTCATATGGTCAAATATTTCTTCTT
TATGATATGCTGATATTTCATCTTTTTTCTGTAATTCTCTATTATTACTTATTTTTAATG
TTTTTCCTATCATTTTGAAAAACTTAAGTGTCCGTTCTTCATTTGAAAATGAGCTAAAAG
TACTACCCCAAATAAATATGTAGAAACAATTGCTATAAAAGTGTCAGCGTAGTTTACAGC
AATGTATTATTATCTTAATGACTACAGATACATATATACACATATATATTCCATATATGT
ATATACATGTATTTTTTTTCAGGTTGTTGGAATTAAGATGCATCTATAACAATAGTACAG
TTCCTGTAAAAAATATTTGAAATGTTTCATGAACATTATATATCTACACATCAGAAATTC
TTTTCGCAACTTCATACATAATCATTTTAAGATCTTTTGAAATAAATAATGCAAATGAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               350-449, - strand, RNAz p=0.983038
               

               
               647-766, - strand, RNAz p=0.999643

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               350-449, - strand, RNAz p=0.983038
               

               
               647-766, - strand, RNAz p=0.999643

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               111-898, gnl|bosTau2|chr2 (26584260-26583503)
               

               
               111-898, gnl|Hg17|chr2 (157999709-158000504)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-898, gnl|bosTau2|chr2 (26584260-26583503)
               

               
               111-898, gnl|Hg17|chr2 (157999709-158000504)

	350-449, - strand, RNAz p=0.983038
	647-766, - strand, RNAz p=0.999643

	111-898, gnl\|bosTau2\|chr2 (26584260-26583503)
	111-898, gnl\|Hg17\|chr2 (157999709-158000504)