Non-Coding RNA Search

Ss1.1-Pig3-SRG8026G08.5

Sequence:


               
               CTGGCCTTCCTTCTACCTCCCATACTCCCTTCTTCTAAAGTAACCCCTGCTGCCCGACTT
CAGCCCCAACCACGTCTTCCCATGGATTTCCTGTTCCATCTCTGCACTGCCTTACACCTT
CTGTGTGCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCCTCTCTCGCT
TTTTCTCTCTATGCCCCAGGCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCT
GACCCCTGTTACTACAACAAGGTTGATCGCACAGTCTACCAATTCTGCAGCCCCAGCTGC
TGGACCAAGTTCCAGCGCACAAGCCCTGAGGGGGGCATTCACCTGAGCTGTCACTACTGC
CACAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGACTGGCAGGACCAGGTGTTCCAGTTC
TGCTGCCGTGACTGCTGTGAGGACTTCAAGCGCCTTCGAGGTGTGGTGTCCCAGTGCGAA
CATTGCCGGCAGGAGAAACTCCTGCATGAGAAACTCCGGTTCAGTGGGGTGGAGAAGAGC
TTTTGCAGCGAAGGCTGCGTGCTGCTGTACAAACAGGACTTCACTAAGAAGCTGGGGTTG
TGCTGCATCACTTGTACTTACTGCTCCCAGACCTGCCAGCGTGGAGTCACCGAGCAGCTG
GATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGAGCAAGTACCTGCTGTGGTAC
TGCAAGGTAAGGAGGCAGCGTGTTACAAAGGAGCGGAAGGGTGGCAGGCAGCACAGGCTG
TTGGGCCACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCTTCCTTCTACCTCCCATACTCCCTTCTTCTAAAGTAACCCCTGCTGCCCGACTT
CAGCCCCAACCACGTCTTCCCATGGATTTCCTGTTCCATCTCTGCACTGCCTTACACCTT
CTGTGTGCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCCTCTCTCGCT
TTTTCTCTCTATGCCCCAGGCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCT
GACCCCTGTTACTACAACAAGGTTGATCGCACAGTCTACCAATTCTGCAGCCCCAGCTGC
TGGACCAAGTTCCAGCGCACAAGCCCTGAGGGGGGCATTCACCTGAGCTGTCACTACTGC
CACAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGACTGGCAGGACCAGGTGTTCCAGTTC
TGCTGCCGTGACTGCTGTGAGGACTTCAAGCGCCTTCGAGGTGTGGTGTCCCAGTGCGAA
CATTGCCGGCAGGAGAAACTCCTGCATGAGAAACTCCGGTTCAGTGGGGTGGAGAAGAGC
TTTTGCAGCGAAGGCTGCGTGCTGCTGTACAAACAGGACTTCACTAAGAAGCTGGGGTTG
TGCTGCATCACTTGTACTTACTGCTCCCAGACCTGCCAGCGTGGAGTCACCGAGCAGCTG
GATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGAGCAAGTACCTGCTGTGGTAC
TGCAAGGTAAGGAGGCAGCGTGTTACAAAGGAGCGGAAGGGTGGCAGGCAGCACAGGCTG
TTGGGCCACCAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               161-280, - strand, RNAz p=0.99728
               

               
               436-554, + strand, RNAz p=0.634736

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, - strand, RNAz p=0.99728
               

               
               436-554, + strand, RNAz p=0.634736

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-315, gnl|bosTau2|chrX (22024946-22024648)
               

               
               1-315, gnl|Hg17|chrX (70251856-70251557)
               

               
               1-315, gnl|Mm7|chrX (96742069-96741777)
               


               
               400-554, gnl|bosTau2|chrX (22024271-22024117)
               

               
               400-554, gnl|Hg17|chrX (70251186-70251032)
               

               
               400-554, gnl|Mm7|chrX (96741412-96741258)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chrX (22024946-22024648)
               

               
               1-315, gnl|Hg17|chrX (70251856-70251557)
               

               
               1-315, gnl|Mm7|chrX (96742069-96741777)
               


               
               400-554, gnl|bosTau2|chrX (22024271-22024117)
               

               
               400-554, gnl|Hg17|chrX (70251186-70251032)
               

               
               400-554, gnl|Mm7|chrX (96741412-96741258)

	161-280, - strand, RNAz p=0.99728
	436-554, + strand, RNAz p=0.634736

	1-315, gnl\|bosTau2\|chrX (22024946-22024648)
	1-315, gnl\|Hg17\|chrX (70251856-70251557)
	1-315, gnl\|Mm7\|chrX (96742069-96741777)

	400-554, gnl\|bosTau2\|chrX (22024271-22024117)
	400-554, gnl\|Hg17\|chrX (70251186-70251032)
	400-554, gnl\|Mm7\|chrX (96741412-96741258)