Non-Coding RNA Search

Ss1.1-Pig3-SRG8026H13.3

Sequence:


               
               CTCCTCCCCTGGACCGCCAGCTCCCTGCAGCCATCAGTCTAGAATGTTCATGTAGATTAT
CGCTGGTCTTCCTATGGGGGTGAAGGATCAAGGGGAAAGAGAAGTAAGAAAACACCAACA
CAATTTTTTTGAAATGTCACCACAGTGATTTCCCAAGAGGCATTTTAGGAACATTTGGAA
AACAACCAGCCCTTTAAATATTTCAGTCAGCCAAGGAAATTGGATGAGAATCATAGATAC
TTTTAAATAATTCACTGAGTTATTGGGTTTTTAGCCAAACTGACCGTGAAAAGCTACCAA
TTTTCCATGGGTGGGGGAGAGAATAAATATCTAGACAGAAAAAGAAAGACTGTTCTGGAT
TCTCAGTGAAAGGCTATAGAAAATCTTTGGAGAAATCTACTTTTTAGGTCCTTACAGGTC
ACTGAGCATCATATTCCACAAAAAGCATACTCTTCCTGGAGAGTGACTGGTGCAGTAATC
CTGTTAGCTGGATCTTTGCCTAGAGCCAGGTTTGTCCTACTGGCCCTCTTTTTTTTTTTT
TTTTTTAAACCCAGATGGTATACTGAAAAATTGGTTCTCTGAGAAGGAAACTGAATTTTC
TGGGGACGGTAGGACTTATTCCCAGAGCTTGCACCCAGGGCCATTGCGTTCCATCCCGGA
TGCTGTCTAACTCCATTTCAGGATCTTTAGTTTCATTATCTATTATTACAGGATTGTTTC
TTTTCTTTTACGAGGGAGGCGTGTTTGGAGAGTGATGTTTAAAAAGTAGACACAGCAAAA
GGTTTCAGGGTGCAGAAAGACCCTTTTCAGCCCCGGGTGGGGACACATGAGAGAAACAGC
AAGGCTTCTGACCCAGTCACCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCCCCTGGACCGCCAGCTCCCTGCAGCCATCAGTCTAGAATGTTCATGTAGATTAT
CGCTGGTCTTCCTATGGGGGTGAAGGATCAAGGGGAAAGAGAAGTAAGAAAACACCAACA
CAATTTTTTTGAAATGTCACCACAGTGATTTCCCAAGAGGCATTTTAGGAACATTTGGAA
AACAACCAGCCCTTTAAATATTTCAGTCAGCCAAGGAAATTGGATGAGAATCATAGATAC
TTTTAAATAATTCACTGAGTTATTGGGTTTTTAGCCAAACTGACCGTGAAAAGCTACCAA
TTTTCCATGGGTGGGGGAGAGAATAAATATCTAGACAGAAAAAGAAAGACTGTTCTGGAT
TCTCAGTGAAAGGCTATAGAAAATCTTTGGAGAAATCTACTTTTTAGGTCCTTACAGGTC
ACTGAGCATCATATTCCACAAAAAGCATACTCTTCCTGGAGAGTGACTGGTGCAGTAATC
CTGTTAGCTGGATCTTTGCCTAGAGCCAGGTTTGTCCTACTGGCCCTCTTTTTTTTTTTT
TTTTTTAAACCCAGATGGTATACTGAAAAATTGGTTCTCTGAGAAGGAAACTGAATTTTC
TGGGGACGGTAGGACTTATTCCCAGAGCTTGCACCCAGGGCCATTGCGTTCCATCCCGGA
TGCTGTCTAACTCCATTTCAGGATCTTTAGTTTCATTATCTATTATTACAGGATTGTTTC
TTTTCTTTTACGAGGGAGGCGTGTTTGGAGAGTGATGTTTAAAAAGTAGACACAGCAAAA
GGTTTCAGGGTGCAGAAAGACCCTTTTCAGCCCCGGGTGGGGACACATGAGAGAAACAGC
AAGGCTTCTGACCCAGTCACCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               444-558, - strand, RNAz p=0.98539

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-558, - strand, RNAz p=0.98539

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-757, gnl|bosTau2|chr19 (40184121-40184897)
               

               
               1-757, gnl|Hg17|chr17 (58853538-58854280)
               

               
               1-757, gnl|Mm7|chr11 (106033244-106034062)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-757, gnl|bosTau2|chr19 (40184121-40184897)
               

               
               1-757, gnl|Hg17|chr17 (58853538-58854280)
               

               
               1-757, gnl|Mm7|chr11 (106033244-106034062)

	1-757, gnl\|bosTau2\|chr19 (40184121-40184897)
	1-757, gnl\|Hg17\|chr17 (58853538-58854280)
	1-757, gnl\|Mm7\|chr11 (106033244-106034062)