Non-Coding RNA Search

Ss1.1-Pig3-SRG8026K23.5

Sequence:


               
               TTGATATGCAGTTGCATCAATTAGAATTGTCTTTAAGGCAAGTTTTGGAGAAGTTAAATA
CAATTAGGCTATTTCACTTATTTATCCACTTATTCATCCATTCAGTATATATTTATTGTT
CCCCAGTTAGCCATTAGAGTATCAAGGTGAACCGGGCAGACTCATCCCTGGCCGTCACAG
AGCCTACAGTCCAGATGAGAAGGACAATTAAACCAGAGAATTTGATGATATACAGAAAGG
GCTATGACAAGGAAAGCAGTGATTACAATAGAAGCACATAGCACATAGCAGGGTCAGCTA
AGATTTCCCAGTGAAGGCAACATTTAACCAGAGACTTGAGAAATAAGCAGGGGTTAGTAG
ACAAAAGAGACAAGATGAGTCCAACCTAGGATAATATGAGAAGAAAAGCCCAGTGGTCAG
AATGCCTGGGACGTGGAGTGGATGCTGAAGAGGAGGCTAGAGAAATAAGCCAAAGCCAGA
TGATAAAGGCTCTTGTCAGCCACCGTAAGGAGTTTAGGATTTATCCCCAGGGGCACTGGG
AGTCTGTTGAAGTTTTGCTCTCTGAAAAGATCACTCTTGCAGCAAGCTGGAAAACTGTTG
CAAGACTGCAAGCAGGAAGGTGAAAATCTGTAGTTGTCCTTATTTTCATTTAGCCATTCG
TCACATTTAGCTTCTGATCTTTTTCAACCAACCTAGTATATATTTAGCACTCAATATATG
GTTGTTGCTTTGTTTGCTCTTATGCGTTTGGAAGATGAATTTATCACTTGACTCTGTATT
TCTCCTCTTGCAAAGGATAGAGTGTTGAGAGAGAAAGTGTCCATCTTAAGAACCTTCCCC
ACTCTTTTTAGTGCTCTAAGGGCCCCCCTTCCACTTTTCTACAATGACTCAACTGGATGC
TATATCCTGAAGTAGCTGCTGAAGTTCTGGTTTCCTTTACAAAAGCTTTTTGAGCTTGCA
GAGAAAGCCCCAAAAATTCCTGATCTATATAAAGAGAGCAGTACTTCAGTTCTCCTGATA
TTAGGAACATGAGGACTTCCCCCATGATAACAGTAGTACATTATTCAACATAAAATTGTG
GTAAATACAGACAAGTGAAAAATAGAGAAAAAGCTACCAAAGTGCCACCCCCAAATGACA
ACCACTATTAATATCTTAAGGCACTTCATTGCAGTCTTTCTTTACTTTTGGGAGAATTGC
TTTTAGATCATTGTGATATATGTATTTGTATCCTGAATCTTTTAAACTTGTTATAACAAA
AATTTATGTTATTTTAAATACTGCATTAAAATTTTAATTGTTGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGATATGCAGTTGCATCAATTAGAATTGTCTTTAAGGCAAGTTTTGGAGAAGTTAAATA
CAATTAGGCTATTTCACTTATTTATCCACTTATTCATCCATTCAGTATATATTTATTGTT
CCCCAGTTAGCCATTAGAGTATCAAGGTGAACCGGGCAGACTCATCCCTGGCCGTCACAG
AGCCTACAGTCCAGATGAGAAGGACAATTAAACCAGAGAATTTGATGATATACAGAAAGG
GCTATGACAAGGAAAGCAGTGATTACAATAGAAGCACATAGCACATAGCAGGGTCAGCTA
AGATTTCCCAGTGAAGGCAACATTTAACCAGAGACTTGAGAAATAAGCAGGGGTTAGTAG
ACAAAAGAGACAAGATGAGTCCAACCTAGGATAATATGAGAAGAAAAGCCCAGTGGTCAG
AATGCCTGGGACGTGGAGTGGATGCTGAAGAGGAGGCTAGAGAAATAAGCCAAAGCCAGA
TGATAAAGGCTCTTGTCAGCCACCGTAAGGAGTTTAGGATTTATCCCCAGGGGCACTGGG
AGTCTGTTGAAGTTTTGCTCTCTGAAAAGATCACTCTTGCAGCAAGCTGGAAAACTGTTG
CAAGACTGCAAGCAGGAAGGTGAAAATCTGTAGTTGTCCTTATTTTCATTTAGCCATTCG
TCACATTTAGCTTCTGATCTTTTTCAACCAACCTAGTATATATTTAGCACTCAATATATG
GTTGTTGCTTTGTTTGCTCTTATGCGTTTGGAAGATGAATTTATCACTTGACTCTGTATT
TCTCCTCTTGCAAAGGATAGAGTGTTGAGAGAGAAAGTGTCCATCTTAAGAACCTTCCCC
ACTCTTTTTAGTGCTCTAAGGGCCCCCCTTCCACTTTTCTACAATGACTCAACTGGATGC
TATATCCTGAAGTAGCTGCTGAAGTTCTGGTTTCCTTTACAAAAGCTTTTTGAGCTTGCA
GAGAAAGCCCCAAAAATTCCTGATCTATATAAAGAGAGCAGTACTTCAGTTCTCCTGATA
TTAGGAACATGAGGACTTCCCCCATGATAACAGTAGTACATTATTCAACATAAAATTGTG
GTAAATACAGACAAGTGAAAAATAGAGAAAAAGCTACCAAAGTGCCACCCCCAAATGACA
ACCACTATTAATATCTTAAGGCACTTCATTGCAGTCTTTCTTTACTTTTGGGAGAATTGC
TTTTAGATCATTGTGATATATGTATTTGTATCCTGAATCTTTTAAACTTGTTATAACAAA
AATTTATGTTATTTTAAATACTGCATTAAAATTTTAATTGTTGCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               114-227, - strand, RNAz p=0.770528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-227, - strand, RNAz p=0.770528

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-619, gnl|bosTau2|chr10 (46373633-46374248)
               

               
               1-619, gnl|canFam2|chr8 (35960164-35960654)
               

               
               1-619, gnl|dasNov1|scaffold_42892 (9787-10324)
               

               
               1-619, gnl|hg17|chr14 (56917942-56918435)
               

               
               1-619, gnl|Hg17|chr14 (56918659-56918020)
               

               
               1-619, gnl|mm7|chr14 (44485470-44485938)
               

               
               1-619, gnl|Mm7|chr14 (44486245-44485574)
               

               
               1-619, gnl|panTro1|chr15 (56370078-56370571)
               

               
               1-619, gnl|rheMac2|chr7 (120386786-120387249)
               

               
               1-619, gnl|rn3|chr15 (25158602-25159159)
               


               
               701-1308, gnl|bosTau2|chr10 (46374595-46375207)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-619, gnl|bosTau2|chr10 (46373633-46374248)
               

               
               1-619, gnl|canFam2|chr8 (35960164-35960654)
               

               
               1-619, gnl|dasNov1|scaffold_42892 (9787-10324)
               

               
               1-619, gnl|hg17|chr14 (56917942-56918435)
               

               
               1-619, gnl|Hg17|chr14 (56918659-56918020)
               

               
               1-619, gnl|mm7|chr14 (44485470-44485938)
               

               
               1-619, gnl|Mm7|chr14 (44486245-44485574)
               

               
               1-619, gnl|panTro1|chr15 (56370078-56370571)
               

               
               1-619, gnl|rheMac2|chr7 (120386786-120387249)
               

               
               1-619, gnl|rn3|chr15 (25158602-25159159)
               


               
               701-1308, gnl|bosTau2|chr10 (46374595-46375207)

	1-619, gnl\|bosTau2\|chr10 (46373633-46374248)
	1-619, gnl\|canFam2\|chr8 (35960164-35960654)
	1-619, gnl\|dasNov1\|scaffold_42892 (9787-10324)
	1-619, gnl\|hg17\|chr14 (56917942-56918435)
	1-619, gnl\|Hg17\|chr14 (56918659-56918020)
	1-619, gnl\|mm7\|chr14 (44485470-44485938)
	1-619, gnl\|Mm7\|chr14 (44486245-44485574)
	1-619, gnl\|panTro1\|chr15 (56370078-56370571)
	1-619, gnl\|rheMac2\|chr7 (120386786-120387249)
	1-619, gnl\|rn3\|chr15 (25158602-25159159)

	701-1308, gnl\|bosTau2\|chr10 (46374595-46375207)