Non-Coding RNA Search

Ss1.1-Pig3-SRG8027A18.3

Sequence:


               
               GAAATTAGGTAAACGAAGCAATAACTTCACGGGGTCGGAAAGCAAGAGGCTCCTTTCATT
TGCCTTAGGTCATGTCTCTTGATCTGTTCCAGCGAAGCAGTGGCCAGATACCAACTCCAC
TCAGGAGGAGAAAACAGTCTTGTTACACCCTGGGGGGGCGGGGGGGCAGAAGTCCTTGGA
GTCTGGATGGCGGTTCTGATGGCCCACGTAGGAGAGGCAGGGCTCAGGGCATACTTTGTC
ACCACGCAACCGGAACTTACCCCGCAGGGCTGTGGGGGCCGTGTCCCAGCTGAAATCTTT
TTAGTGTATGACTCTGAATGGCACTTATATTCCATTCTGGCTCACATGAAATCAACTGAA
GCCCTTTGTTCAAGCTTTAGGCTCTCGGGCATGGAAATGAGGGTGTATCTGTGGCTGTCT
TACAGGAAAATTCTTGTTTGTCTCTGAATGAGAGCACAGAGGCATTGAATTTACAGAGAT
GCAAGCTTGCCTACTAAACAAGGGAGCAGCATTTTATATGTAGGTCAGCTTTTCTTGCTT
TTCATTCATTCCTGATGATAATGTGTGGGCTCTTCTTGCTATTGAGGTTCGACTAGGGCT
AAAACAAGGCTGAATTTTCAAAGAGCATTTGAATAGTGTATTTTAAAATCAGGGAGTTTC
CTGATTTTAAACTAGCAGTGGCCTAGCAGTCTAAGGATTCAGTGTTGTCATTGCTGTGGC
TCGAGTTTGATCCCAGGCAGGAATTTTCACAAGTCATGGGCAGACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATTAGGTAAACGAAGCAATAACTTCACGGGGTCGGAAAGCAAGAGGCTCCTTTCATT
TGCCTTAGGTCATGTCTCTTGATCTGTTCCAGCGAAGCAGTGGCCAGATACCAACTCCAC
TCAGGAGGAGAAAACAGTCTTGTTACACCCTGGGGGGGCGGGGGGGCAGAAGTCCTTGGA
GTCTGGATGGCGGTTCTGATGGCCCACGTAGGAGAGGCAGGGCTCAGGGCATACTTTGTC
ACCACGCAACCGGAACTTACCCCGCAGGGCTGTGGGGGCCGTGTCCCAGCTGAAATCTTT
TTAGTGTATGACTCTGAATGGCACTTATATTCCATTCTGGCTCACATGAAATCAACTGAA
GCCCTTTGTTCAAGCTTTAGGCTCTCGGGCATGGAAATGAGGGTGTATCTGTGGCTGTCT
TACAGGAAAATTCTTGTTTGTCTCTGAATGAGAGCACAGAGGCATTGAATTTACAGAGAT
GCAAGCTTGCCTACTAAACAAGGGAGCAGCATTTTATATGTAGGTCAGCTTTTCTTGCTT
TTCATTCATTCCTGATGATAATGTGTGGGCTCTTCTTGCTATTGAGGTTCGACTAGGGCT
AAAACAAGGCTGAATTTTCAAAGAGCATTTGAATAGTGTATTTTAAAATCAGGGAGTTTC
CTGATTTTAAACTAGCAGTGGCCTAGCAGTCTAAGGATTCAGTGTTGTCATTGCTGTGGC
TCGAGTTTGATCCCAGGCAGGAATTTTCACAAGTCATGGGCAGACCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               349-458, - strand, RNAz p=0.833083
               

               
               369-543, + strand, RNAz p=0.997629

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-458, - strand, RNAz p=0.833083
               

               
               369-543, + strand, RNAz p=0.997629

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               398-500, + strand, RNAmicro p=0.999968

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               398-500, + strand, RNAmicro p=0.999968

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               40-653, gnl|bosTau2|chr21 (16070740-16070130)
               

               
               40-653, gnl|canFam2|chr3 (55112723-55113326)
               

               
               40-653, gnl|dasNov1|scaffold_15975 (1223-610)
               

               
               40-653, gnl|echTel1|scaffold_322850 (3990-4536)
               

               
               40-653, gnl|hg17|chr15 (87541716-87542337)
               

               
               40-653, gnl|Hg17|chr15 (87541790-87542450)
               

               
               40-653, gnl|loxAfr1|scaffold_5779 (41314-41941)
               

               
               40-653, gnl|mm7|chr7 (75230347-75230889)
               

               
               40-653, gnl|monDom2|scaffold_45 (11364671-11363999)
               

               
               40-653, gnl|oryCun1|scaffold_144022 (3846-3239)
               

               
               40-653, gnl|panTro1|chr16 (88411507-88412128)
               

               
               40-653, gnl|rheMac2|chr7 (68823110-68823731)
               

               
               40-653, gnl|rn3|chr1 (135191516-135192083)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-653, gnl|bosTau2|chr21 (16070740-16070130)
               

               
               40-653, gnl|canFam2|chr3 (55112723-55113326)
               

               
               40-653, gnl|dasNov1|scaffold_15975 (1223-610)
               

               
               40-653, gnl|echTel1|scaffold_322850 (3990-4536)
               

               
               40-653, gnl|hg17|chr15 (87541716-87542337)
               

               
               40-653, gnl|Hg17|chr15 (87541790-87542450)
               

               
               40-653, gnl|loxAfr1|scaffold_5779 (41314-41941)
               

               
               40-653, gnl|mm7|chr7 (75230347-75230889)
               

               
               40-653, gnl|monDom2|scaffold_45 (11364671-11363999)
               

               
               40-653, gnl|oryCun1|scaffold_144022 (3846-3239)
               

               
               40-653, gnl|panTro1|chr16 (88411507-88412128)
               

               
               40-653, gnl|rheMac2|chr7 (68823110-68823731)
               

               
               40-653, gnl|rn3|chr1 (135191516-135192083)

	349-458, - strand, RNAz p=0.833083
	369-543, + strand, RNAz p=0.997629

	40-653, gnl\|bosTau2\|chr21 (16070740-16070130)
	40-653, gnl\|canFam2\|chr3 (55112723-55113326)
	40-653, gnl\|dasNov1\|scaffold_15975 (1223-610)
	40-653, gnl\|echTel1\|scaffold_322850 (3990-4536)
	40-653, gnl\|hg17\|chr15 (87541716-87542337)
	40-653, gnl\|Hg17\|chr15 (87541790-87542450)
	40-653, gnl\|loxAfr1\|scaffold_5779 (41314-41941)
	40-653, gnl\|mm7\|chr7 (75230347-75230889)
	40-653, gnl\|monDom2\|scaffold_45 (11364671-11363999)
	40-653, gnl\|oryCun1\|scaffold_144022 (3846-3239)
	40-653, gnl\|panTro1\|chr16 (88411507-88412128)
	40-653, gnl\|rheMac2\|chr7 (68823110-68823731)
	40-653, gnl\|rn3\|chr1 (135191516-135192083)