Ss1.1-Pig3-SRG8027C15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCTGCTGATGCTTCACCGGGGCTTTCCTCCTGGGCTATGTGACCTTCCGAGGGTCC TGCCAGGCGTGCGGGGACCATGTGTTGGTGGTCAGCGAGGATGTCAACTCTGAGCTGGGC CTGGACTCCCACCAGGGCACACTGTACTGGAGCGACCTCCAGGCCATGTTCCTGCGGCTC CTGGGGGAGGGCCCTCTGGAGGACACCATCAGGCAAACCAGCCATCGGGAGAGGGTGGCC GGCTCGGCTGGGAGGGCAGCCCTGGCTCAGGACATCCGCGCTGCGCTCTTGCGAGAGAAG CTGGACCACGTGTGGATGGACACGCACTACGTGGGGCGTGCAGTTCCCAGACCGGGCTCA TCCCAACACCCTGCACTGGGTTGATGCCGCCACCGGGAGGCCTGGGGAGCAGCTGCCCCT GGAGGACCCCGACGTCTACTGCCCCTACAGCGCCACGGGCAACGCCACGGGAGAGCTGGT GTACGCCCACTACGGGCGGCCAGAGGACNTGCAGGACCTGCGGGCCCGGGGCGTGGAGCC GGCGGGACGCCTCCTGCTGGTGCGCTTGGGGCTGATCAGCTTCGCCCAGAAGGTGGCCAG TGCCCAGGACTTTGGGGCCCAAGGAGTGCTCATATACCCAGACCCAGCGGACTTCTCNCA GGACCCACACAAGCTCAGCCTGTCCAGCCACCGGGCTGTGTATGGACATGTGCACCTGGG AACAGGGGACCCCTACACACCTGGCTTCCCTTCCTTCAATCAAACCCAGTTCCCTCCAGT CCAATCCTCGGGCCTCCCGAGCATCCCGGCCCAGCCCATCAGTGCGGACATTGCCTCTCT CCTACTGAAGAAGTTTGAAGGCCCTGTGGCCCCCAAGGAGTGGCAGGGCTACCTCCCAGT CTCCCCTTATCGCCTGGGCCCTGGGCCAGGCCTGCACTTGGGGTCAACAACCACAGGACC TCCACCCCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCTGCTGATGCTTCACCGGGGCTTTCCTCCTGGGCTATGTGACCTTCCGAGGGTCC TGCCAGGCGTGCGGGGACCATGTGTTGGTGGTCAGCGAGGATGTCAACTCTGAGCTGGGC CTGGACTCCCACCAGGGCACACTGTACTGGAGCGACCTCCAGGCCATGTTCCTGCGGCTC CTGGGGGAGGGCCCTCTGGAGGACACCATCAGGCAAACCAGCCATCGGGAGAGGGTGGCC GGCTCGGCTGGGAGGGCAGCCCTGGCTCAGGACATCCGCGCTGCGCTCTTGCGAGAGAAG CTGGACCACGTGTGGATGGACACGCACTACGTGGGGCGTGCAGTTCCCAGACCGGGCTCA TCCCAACACCCTGCACTGGGTTGATGCCGCCACCGGGAGGCCTGGGGAGCAGCTGCCCCT GGAGGACCCCGACGTCTACTGCCCCTACAGCGCCACGGGCAACGCCACGGGAGAGCTGGT GTACGCCCACTACGGGCGGCCAGAGGACNTGCAGGACCTGCGGGCCCGGGGCGTGGAGCC GGCGGGACGCCTCCTGCTGGTGCGCTTGGGGCTGATCAGCTTCGCCCAGAAGGTGGCCAG TGCCCAGGACTTTGGGGCCCAAGGAGTGCTCATATACCCAGACCCAGCGGACTTCTCNCA GGACCCACACAAGCTCAGCCTGTCCAGCCACCGGGCTGTGTATGGACATGTGCACCTGGG AACAGGGGACCCCTACACACCTGGCTTCCCTTCCTTCAATCAAACCCAGTTCCCTCCAGT CCAATCCTCGGGCCTCCCGAGCATCCCGGCCCAGCCCATCAGTGCGGACATTGCCTCTCT CCTACTGAAGAAGTTTGAAGGCCCTGTGGCCCCCAAGGAGTGGCAGGGCTACCTCCCAGT CTCCCCTTATCGCCTGGGCCCTGGGCCAGGCCTGCACTTGGGGTCAACAACCACAGGACC TCCACCCCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 469-587, + strand, RNAz p=0.508465 | |
| 759-848, + strand, RNAz p=0.976976 | |
| 850-968, - strand, RNAz p=0.999502 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-587, + strand, RNAz p=0.508465 | |
| 759-848, + strand, RNAz p=0.976976 | |
| 850-968, - strand, RNAz p=0.999502 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 25-213, gnl|bosTau2|chr25 (32344745-32344933) | |
| 25-213, gnl|canFam2|chr6 (12068166-12067952) | |
| 25-213, gnl|danRer3|chrUn (103789251-103789468) | |
| 25-213, gnl|echTel1|scaffold_318381 (39288-39502) | |
| 25-213, gnl|hg17|chr7 (99882957-99883171) | |
| 25-213, gnl|Hg17|chr7 (99883147-99882959) | |
| 25-213, gnl|mm7|chr5 (136490064-136489861) | |
| 25-213, gnl|Mm7|chr5 (136489881-136490060) | |
| 25-213, gnl|monDom2|scaffold_66 (2494193-2494386) | |
| 25-213, gnl|oryCun1|scaffold_140425 (2106-1892) | |
| 25-213, gnl|panTro1|chr6 (101658162-101658376) | |
| 25-213, gnl|rheMac2|chr3 (47825329-47825543) | |
| 25-213, gnl|rn3|chr12 (19629960-19629757) | |
| 469-595, gnl|bosTau2|chr25 (32347705-32347831) | |
| 469-595, gnl|canFam2|chr6 (12073675-12073517) | |
| 469-595, gnl|echTel1|scaffold_315256 (39869-40031) | |
| 469-595, gnl|fr1|chrUn (267991488-267991343) | |
| 469-595, gnl|hg17|chr7 (99875265-99875422) | |
| 469-595, gnl|Hg17|chr7 (99875398-99875272) | |
| 469-595, gnl|loxAfr1|scaffold_16571 (9104-9262) | |
| 469-595, gnl|mm7|chr5 (136493216-136493057) | |
| 469-595, gnl|Mm7|chr5 (136493081-136493207) | |
| 469-595, gnl|monDom2|scaffold_66 (2486141-2486294) | |
| 469-595, gnl|panTro1|chr6 (101650403-101650560) | |
| 469-595, gnl|rheMac2|chr3 (47814433-47814590) | |
| 469-595, gnl|rn3|chr12 (19633221-19633062) | |
| 469-595, gnl|tetNig1|chrUn_random (106214273-106214130) | |
| 706-848, gnl|bosTau2|chr25 (32348440-32348582) | |
| 706-848, gnl|canFam2|chr6 (12074629-12074473) | |
| 706-848, gnl|danRer3|chrUn (103784159-103784324) | |
| 706-848, gnl|dasNov1|scaffold_111893 (890-1019) | |
| 706-848, gnl|echTel1|scaffold_315256 (39199-39355) | |
| 706-848, gnl|fr1|chrUn (267991826-267991661) | |
| 706-848, gnl|hg17|chr7 (99874076-99874232) | |
| 706-848, gnl|Hg17|chr7 (99874223-99874081) | |
| 706-848, gnl|loxAfr1|scaffold_16571 (8230-8386) | |
| 706-848, gnl|mm7|chr5 (136496079-136495923) | |
| 706-848, gnl|Mm7|chr5 (136495930-136496072) | |
| 706-848, gnl|monDom2|scaffold_66 (2484815-2484971) | |
| 706-848, gnl|oryCun1|scaffold_140425 (5479-5323) | |
| 706-848, gnl|panTro1|chr6 (101649217-101649373) | |
| 706-848, gnl|rheMac2|chr3 (47813216-47813372) | |
| 706-848, gnl|rn3|chr12 (19635492-19635336) | |
| 706-848, gnl|tetNig1|chrUn_random (106214615-106214457) | |
| 850-968, gnl|bosTau2|chr25 (32348947-32349066) | |
| 850-968, gnl|Hg17|chr7 (99873325-99873207) | |
| 850-968, gnl|Mm7|chr5 (136497148-136497266) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-213, gnl|bosTau2|chr25 (32344745-32344933) | |
| 25-213, gnl|canFam2|chr6 (12068166-12067952) | |
| 25-213, gnl|danRer3|chrUn (103789251-103789468) | |
| 25-213, gnl|echTel1|scaffold_318381 (39288-39502) | |
| 25-213, gnl|hg17|chr7 (99882957-99883171) | |
| 25-213, gnl|Hg17|chr7 (99883147-99882959) | |
| 25-213, gnl|mm7|chr5 (136490064-136489861) | |
| 25-213, gnl|Mm7|chr5 (136489881-136490060) | |
| 25-213, gnl|monDom2|scaffold_66 (2494193-2494386) | |
| 25-213, gnl|oryCun1|scaffold_140425 (2106-1892) | |
| 25-213, gnl|panTro1|chr6 (101658162-101658376) | |
| 25-213, gnl|rheMac2|chr3 (47825329-47825543) | |
| 25-213, gnl|rn3|chr12 (19629960-19629757) | |
| 469-595, gnl|bosTau2|chr25 (32347705-32347831) | |
| 469-595, gnl|canFam2|chr6 (12073675-12073517) | |
| 469-595, gnl|echTel1|scaffold_315256 (39869-40031) | |
| 469-595, gnl|fr1|chrUn (267991488-267991343) | |
| 469-595, gnl|hg17|chr7 (99875265-99875422) | |
| 469-595, gnl|Hg17|chr7 (99875398-99875272) | |
| 469-595, gnl|loxAfr1|scaffold_16571 (9104-9262) | |
| 469-595, gnl|mm7|chr5 (136493216-136493057) | |
| 469-595, gnl|Mm7|chr5 (136493081-136493207) | |
| 469-595, gnl|monDom2|scaffold_66 (2486141-2486294) | |
| 469-595, gnl|panTro1|chr6 (101650403-101650560) | |
| 469-595, gnl|rheMac2|chr3 (47814433-47814590) | |
| 469-595, gnl|rn3|chr12 (19633221-19633062) | |
| 469-595, gnl|tetNig1|chrUn_random (106214273-106214130) | |
| 706-848, gnl|bosTau2|chr25 (32348440-32348582) | |
| 706-848, gnl|canFam2|chr6 (12074629-12074473) | |
| 706-848, gnl|danRer3|chrUn (103784159-103784324) | |
| 706-848, gnl|dasNov1|scaffold_111893 (890-1019) | |
| 706-848, gnl|echTel1|scaffold_315256 (39199-39355) | |
| 706-848, gnl|fr1|chrUn (267991826-267991661) | |
| 706-848, gnl|hg17|chr7 (99874076-99874232) | |
| 706-848, gnl|Hg17|chr7 (99874223-99874081) | |
| 706-848, gnl|loxAfr1|scaffold_16571 (8230-8386) | |
| 706-848, gnl|mm7|chr5 (136496079-136495923) | |
| 706-848, gnl|Mm7|chr5 (136495930-136496072) | |
| 706-848, gnl|monDom2|scaffold_66 (2484815-2484971) | |
| 706-848, gnl|oryCun1|scaffold_140425 (5479-5323) | |
| 706-848, gnl|panTro1|chr6 (101649217-101649373) | |
| 706-848, gnl|rheMac2|chr3 (47813216-47813372) | |
| 706-848, gnl|rn3|chr12 (19635492-19635336) | |
| 706-848, gnl|tetNig1|chrUn_random (106214615-106214457) | |
| 850-968, gnl|bosTau2|chr25 (32348947-32349066) | |
| 850-968, gnl|Hg17|chr7 (99873325-99873207) | |
| 850-968, gnl|Mm7|chr5 (136497148-136497266) |