Non-Coding RNA Search

Ss1.1-Pig3-SRG8027C17.3

Sequence:


               
               CCGAATGATAACTGACGAAGGCATCTGTCACTTAACTGTAAGTTTTATAGTGAAAAATTT
CCCCCTTTGGATGTATATTAAATTTAGACATTTTAGTTTAGTTTTGTTTTCTGTTAATCT
TCACTCCAGGTCTTTTCTGTGCTTTAGGTTGATTCTTCACCACACTGAAACCATTAGGAA
AAATCCTTGTGATTAACAGCAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATT
ATTTTAAATGGCGACTGATACGTCTCAAGGTGACCTCGTCCATCCTAAGGCACTCCCACT
TATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGGTAGAAGATAACAC
CATGCCGATTCGTAGAGCTGTGAATTCTACCCGGGAGACTCCTCCCAAGAGCAAGCTTGC
TGACGGGGAGGAACAAAAACCAGAACCAGATGTAAGTTCAGAGGAATCTGTCTCCACTGT
AGAAGAACAAGAGAATGAAACTCCACCTGCTACATCTAGTGAGGCAGAGCAGCCAAAGGG
GGAACCTGAGAATGAAGAGAAGGAAGAAAACAAGCCTTCTGAGGAAACCAAAAAGGAGTA
AGGACTTAATGCCTTCTTGCTACTTATAATGGAAGAGTATGTAAAAGGACCATAGAGCAG
ACTTTTTAAGTTTTATAACATTGATTTTTTGCTCGATACGTGCTATTCGGATTTACTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAATGATAACTGACGAAGGCATCTGTCACTTAACTGTAAGTTTTATAGTGAAAAATTT
CCCCCTTTGGATGTATATTAAATTTAGACATTTTAGTTTAGTTTTGTTTTCTGTTAATCT
TCACTCCAGGTCTTTTCTGTGCTTTAGGTTGATTCTTCACCACACTGAAACCATTAGGAA
AAATCCTTGTGATTAACAGCAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATT
ATTTTAAATGGCGACTGATACGTCTCAAGGTGACCTCGTCCATCCTAAGGCACTCCCACT
TATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGGTAGAAGATAACAC
CATGCCGATTCGTAGAGCTGTGAATTCTACCCGGGAGACTCCTCCCAAGAGCAAGCTTGC
TGACGGGGAGGAACAAAAACCAGAACCAGATGTAAGTTCAGAGGAATCTGTCTCCACTGT
AGAAGAACAAGAGAATGAAACTCCACCTGCTACATCTAGTGAGGCAGAGCAGCCAAAGGG
GGAACCTGAGAATGAAGAGAAGGAAGAAAACAAGCCTTCTGAGGAAACCAAAAAGGAGTA
AGGACTTAATGCCTTCTTGCTACTTATAATGGAAGAGTATGTAAAAGGACCATAGAGCAG
ACTTTTTAAGTTTTATAACATTGATTTTTTGCTCGATACGTGCTATTCGGATTTACTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PIM9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PIM9_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               123-240, + strand, RNAz p=0.899704
               

               
               442-635, - strand, RNAz p=0.99398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-240, + strand, RNAz p=0.899704
               

               
               442-635, - strand, RNAz p=0.99398

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC032139, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC032139, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-343, gnl|bosTau2|chr2 (85754375-85754045)
               

               
               3-343, gnl|Hg17|chr1 (20852475-20852144)
               

               
               3-343, gnl|Mm7|chr4 (137599838-137600164)
               


               
               442-720, gnl|bosTau2|chr2 (85750783-85750505)
               

               
               442-720, gnl|Hg17|chr1 (20848551-20848273)
               

               
               442-720, gnl|Mm7|chr4 (137601930-137602212)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-343, gnl|bosTau2|chr2 (85754375-85754045)
               

               
               3-343, gnl|Hg17|chr1 (20852475-20852144)
               

               
               3-343, gnl|Mm7|chr4 (137599838-137600164)
               


               
               442-720, gnl|bosTau2|chr2 (85750783-85750505)
               

               
               442-720, gnl|Hg17|chr1 (20848551-20848273)
               

               
               442-720, gnl|Mm7|chr4 (137601930-137602212)

	123-240, + strand, RNAz p=0.899704
	442-635, - strand, RNAz p=0.99398

	3-343, gnl\|bosTau2\|chr2 (85754375-85754045)
	3-343, gnl\|Hg17\|chr1 (20852475-20852144)
	3-343, gnl\|Mm7\|chr4 (137599838-137600164)

	442-720, gnl\|bosTau2\|chr2 (85750783-85750505)
	442-720, gnl\|Hg17\|chr1 (20848551-20848273)
	442-720, gnl\|Mm7\|chr4 (137601930-137602212)