Non-Coding RNA Search

Ss1.1-Pig3-SRG8027D19.3

Sequence:


               
               TACCCATGAGATAGTCACAGTGGGGGAGCCTTTACTCTCCTCTGGGGTTCGAAGCATTGG
GTCCAGGCGTCACAGTACCTCTTCTTTGTCACCCCAGAGGGGGAAGCTCCTTTTTTTGTC
TCCAATGAGGAGTGGGGGGGCTTACTCCAGGAATAGCGTGTCCTCACTCTCCACCATAGG
GGGCCAGTAGCGTCTTGAGTCAAGTGCCAAAGCAGCTGATCATGTCTTAGGGCCACTGAA
TTCAAATACTAATTTAGGGCAAAACACTCCCACCTCTTCAAATTTGCAAAGGACAGTGGT
TACTCTGGGCACTAAAACCAGTCACTTGGACGGCCCTTCGTCTTCAGAGATGAAGCACTC
TAGTGCCTCAGACTCGACCTCCAAGAGCTCCTCTTTGAAGGGAGAAAAGACCAAAATGCC
GAGTTCCAAGAACTCGGAGGGGTCTGCACATAACGTGGCTTACCCTGGCATTCCGAAACT
GGCCCCACAGGTTCATAATACAACATCTGGAGAATTGAACGTTAGTAAAATGGGCACTTT
CGCTGAACTCTCTTCAGTGCCATTTTCTTCTAAAGAGGCCCTCCCGTTCCCACCACTCCA
TTTGAGAGGGCAAAGGAACGATCGAGACCAACAGCCAGATTCTAACCAGTTGGCAAACCC
TCCTCCCGATGAAGATACTGAAGTCAAAACTTTGAAGTTGTCTGGAGTGAGCAGCAGAGC
GTCCACTATCAGTGAACACGTGGGATCTAGTTCCAGAGACAGGAGACAGAAAGGGAAAAA
ATCTGGTAAAGACACTTTCAAAGAAAAGCATTCCAGTAAATCTTTTTTGGAACCTGGTCA
GGTGACAACTGGTGAGGAAGGAAACCTAAAGCCAGAGTTCATGGATGAAGTTTTGACTCC
TGAGTTCATGGGGCAACGACCATGTAATAATGTTTCTTCTGATAAGATTGGGGACAAAGT
CCATTCTATTGCAGGAGTCCCCAAAGCTGCATCCATGCAAGTAGAAGGGTCTGCCAAGGA
ATTACAGACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCCATGAGATAGTCACAGTGGGGGAGCCTTTACTCTCCTCTGGGGTTCGAAGCATTGG
GTCCAGGCGTCACAGTACCTCTTCTTTGTCACCCCAGAGGGGGAAGCTCCTTTTTTTGTC
TCCAATGAGGAGTGGGGGGGCTTACTCCAGGAATAGCGTGTCCTCACTCTCCACCATAGG
GGGCCAGTAGCGTCTTGAGTCAAGTGCCAAAGCAGCTGATCATGTCTTAGGGCCACTGAA
TTCAAATACTAATTTAGGGCAAAACACTCCCACCTCTTCAAATTTGCAAAGGACAGTGGT
TACTCTGGGCACTAAAACCAGTCACTTGGACGGCCCTTCGTCTTCAGAGATGAAGCACTC
TAGTGCCTCAGACTCGACCTCCAAGAGCTCCTCTTTGAAGGGAGAAAAGACCAAAATGCC
GAGTTCCAAGAACTCGGAGGGGTCTGCACATAACGTGGCTTACCCTGGCATTCCGAAACT
GGCCCCACAGGTTCATAATACAACATCTGGAGAATTGAACGTTAGTAAAATGGGCACTTT
CGCTGAACTCTCTTCAGTGCCATTTTCTTCTAAAGAGGCCCTCCCGTTCCCACCACTCCA
TTTGAGAGGGCAAAGGAACGATCGAGACCAACAGCCAGATTCTAACCAGTTGGCAAACCC
TCCTCCCGATGAAGATACTGAAGTCAAAACTTTGAAGTTGTCTGGAGTGAGCAGCAGAGC
GTCCACTATCAGTGAACACGTGGGATCTAGTTCCAGAGACAGGAGACAGAAAGGGAAAAA
ATCTGGTAAAGACACTTTCAAAGAAAAGCATTCCAGTAAATCTTTTTTGGAACCTGGTCA
GGTGACAACTGGTGAGGAAGGAAACCTAAAGCCAGAGTTCATGGATGAAGTTTTGACTCC
TGAGTTCATGGGGCAACGACCATGTAATAATGTTTCTTCTGATAAGATTGGGGACAAAGT
CCATTCTATTGCAGGAGTCCCCAAAGCTGCATCCATGCAAGTAGAAGGGTCTGCCAAGGA
ATTACAGACACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               321-440, - strand, RNAz p=0.938442
               

               
               881-1000, + strand, RNAz p=0.909503

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, - strand, RNAz p=0.938442
               

               
               881-1000, + strand, RNAz p=0.909503

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1032, gnl|bosTau2|chr15 (15039913-15038883)
               

               
               2-1032, gnl|Hg17|chr11 (117878340-117879370)
               

               
               2-1032, gnl|Mm7|chr9 (44756847-44755826)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1032, gnl|bosTau2|chr15 (15039913-15038883)
               

               
               2-1032, gnl|Hg17|chr11 (117878340-117879370)
               

               
               2-1032, gnl|Mm7|chr9 (44756847-44755826)

	321-440, - strand, RNAz p=0.938442
	881-1000, + strand, RNAz p=0.909503

	2-1032, gnl\|bosTau2\|chr15 (15039913-15038883)
	2-1032, gnl\|Hg17\|chr11 (117878340-117879370)
	2-1032, gnl\|Mm7\|chr9 (44756847-44755826)