Non-Coding RNA Search

Ss1.1-Pig3-SRG8027F18.3

Sequence:


               
               CTGAAGAGCCACCAGCCCAGCTTTCCAGGCCTGGGGGAGCTGGGGAGCTTCATTTTGCCG
TCCAGCAGAGGGGCTTCCTTTGGGGCTGGGCCCTGTGGGCAGGCATTCCACTCCACCAGC
TTGGTGCTGAGACGGGACACCTCCAGCAGACCTTTCCCAGCTTCTCCCCACCCCAGGGGC
GAGGGCGTTCTGGCTAGTCAGGGGCCCTTTGTAGGGACAGTTATGTGGCGGGGGGGAGAG
AGGTCCCGCGTGGGGGTTGCTGAAGGAGGAAAAACAACACGCGGACTATTGATTCAGCCT
CACCTTGGCGCTCCTGGCTCAGCAGCCAGTGTTTGCCCTGGCTGCCCTGGCTCAGATTAC
GCAAAGCTGGTGGGCGTGGAACAACCAAGGGGGCTGCTGGAGGCCTGCAGGCCAGGGGTG
GGTGGCCTCAGCGTTTCCCAGGAAACTGGGTAAAAAAAGAGTCTGGGCCCCTGACTTTGC
TAATGGCCTGGGCCATAGAGGGAGGGCGATGCTGCTGCAGTTCCCTGTGTTCAGTCCCCA
AAGCCCCCATCCTGTCTTGGGTTGCCCACTTTTTCTTGCCAAGGGCTGTGGGTCTTTGCA
GTAACTGTAGCTGGGTCTGCTTTGCTGAGCCAGAAAGCCCTGGTGAGCTGCACAGACGCC
GCCCATTCAAAAACTTAGAAAAGCCAACCTTTTATTCCTTTATAAACTCTACCTGGGTAA
TTTGGAAAATATACAATGACACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGAGCCACCAGCCCAGCTTTCCAGGCCTGGGGGAGCTGGGGAGCTTCATTTTGCCG
TCCAGCAGAGGGGCTTCCTTTGGGGCTGGGCCCTGTGGGCAGGCATTCCACTCCACCAGC
TTGGTGCTGAGACGGGACACCTCCAGCAGACCTTTCCCAGCTTCTCCCCACCCCAGGGGC
GAGGGCGTTCTGGCTAGTCAGGGGCCCTTTGTAGGGACAGTTATGTGGCGGGGGGGAGAG
AGGTCCCGCGTGGGGGTTGCTGAAGGAGGAAAAACAACACGCGGACTATTGATTCAGCCT
CACCTTGGCGCTCCTGGCTCAGCAGCCAGTGTTTGCCCTGGCTGCCCTGGCTCAGATTAC
GCAAAGCTGGTGGGCGTGGAACAACCAAGGGGGCTGCTGGAGGCCTGCAGGCCAGGGGTG
GGTGGCCTCAGCGTTTCCCAGGAAACTGGGTAAAAAAAGAGTCTGGGCCCCTGACTTTGC
TAATGGCCTGGGCCATAGAGGGAGGGCGATGCTGCTGCAGTTCCCTGTGTTCAGTCCCCA
AAGCCCCCATCCTGTCTTGGGTTGCCCACTTTTTCTTGCCAAGGGCTGTGGGTCTTTGCA
GTAACTGTAGCTGGGTCTGCTTTGCTGAGCCAGAAAGCCCTGGTGAGCTGCACAGACGCC
GCCCATTCAAAAACTTAGAAAAGCCAACCTTTTATTCCTTTATAAACTCTACCTGGGTAA
TTTGGAAAATATACAATGACACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-482, + strand, RNAz p=0.908304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-482, + strand, RNAz p=0.908304

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               308-395, + strand, RNAmicro p=0.999114
               

               
               309-407, - strand, RNAmicro p=0.927961
               

               
               405-464, + strand, RNAmicro p=0.903853

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               308-395, + strand, RNAmicro p=0.999114
               

               
               309-407, - strand, RNAmicro p=0.927961
               

               
               405-464, + strand, RNAmicro p=0.903853

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-742, gnl|bosTau2|chr21 (12186888-12186258)
               

               
               111-742, gnl|Hg17|chr15 (89218318-89218991)
               

               
               111-742, gnl|Mm7|chr7 (76271912-76271303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-742, gnl|bosTau2|chr21 (12186888-12186258)
               

               
               111-742, gnl|Hg17|chr15 (89218318-89218991)
               

               
               111-742, gnl|Mm7|chr7 (76271912-76271303)

	308-395, + strand, RNAmicro p=0.999114
	309-407, - strand, RNAmicro p=0.927961
	405-464, + strand, RNAmicro p=0.903853

	111-742, gnl\|bosTau2\|chr21 (12186888-12186258)
	111-742, gnl\|Hg17\|chr15 (89218318-89218991)
	111-742, gnl\|Mm7\|chr7 (76271912-76271303)