Non-Coding RNA Search

Ss1.1-Pig3-SRG8027N08.5

Sequence:


               
               CAGGGTGTATGAGACAGCCTTGCCTTGGTGAGGGCGCTGACCCTGTGTCCAGCCCTCCGA
CCTGGCCGTAACCCACGCTCCCCCTTGTGCTGTGCTCCCTCGCTCCTCCGGATGCGTGCT
ATGAGGGGCACAAGGAGTCAGGCGGTAGATGTCTTGTCAGGAAAGAAGCCAAGAAATGGC
AACAGGATCTCACTGCTCACTGCCTTCTCCCATGTTTTCTGATGAAGGCTCTTGATGTCC
ATCATCTGGCACACGTTTTTATGGTCACAGGACAGCTTTATGCAAGGCTGTGGAGGAAGA
CGGTGGCCGGGTGCTATTTGATGGATGTCAACCTTTGTCAATGTTCTTCTTGGAATGTGC
CTTGAATTGCTGCTTCTTGCTTTCGTGAAGCTGGTGGGTTGGTTAATAAAGTTTCCTCAG
ATCGTGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGTGTATGAGACAGCCTTGCCTTGGTGAGGGCGCTGACCCTGTGTCCAGCCCTCCGA
CCTGGCCGTAACCCACGCTCCCCCTTGTGCTGTGCTCCCTCGCTCCTCCGGATGCGTGCT
ATGAGGGGCACAAGGAGTCAGGCGGTAGATGTCTTGTCAGGAAAGAAGCCAAGAAATGGC
AACAGGATCTCACTGCTCACTGCCTTCTCCCATGTTTTCTGATGAAGGCTCTTGATGTCC
ATCATCTGGCACACGTTTTTATGGTCACAGGACAGCTTTATGCAAGGCTGTGGAGGAAGA
CGGTGGCCGGGTGCTATTTGATGGATGTCAACCTTTGTCAATGTTCTTCTTGGAATGTGC
CTTGAATTGCTGCTTCTTGCTTTCGTGAAGCTGGTGGGTTGGTTAATAAAGTTTCCTCAG
ATCGTGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-343, + strand, RNAz p=0.999626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-343, + strand, RNAz p=0.999626

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               316-428, - strand, RNAmicro p=0.992823

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               316-428, - strand, RNAmicro p=0.992823

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-430, gnl|bosTau2|chr23 (31723562-31723135)
               

               
               1-430, gnl|Hg17|chr6 (2778380-2777568)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-430, gnl|bosTau2|chr23 (31723562-31723135)
               

               
               1-430, gnl|Hg17|chr6 (2778380-2777568)

	1-430, gnl\|bosTau2\|chr23 (31723562-31723135)
	1-430, gnl\|Hg17\|chr6 (2778380-2777568)