Non-Coding RNA Search

Ss1.1-Pig3-SRG8027P19.3

Sequence:


               
               TTAAGTAGACTTAAGGTTGGTCTCTTTCCAGACCAAATATTGAATGATTCCCATTGTTTA
TTATCTTTGGAGTTTGAGTTGAGTGATAAATTGAGTTGCTAATTTGCATCTTCTCTCCTT
CCCCTTCCAGGAGGCTATCCCAGGCAGCCAAATTATAATGCCTTGCCCAATGCTAACTAC
CCCAGTGCAGGCATGGCTGGAAGTATGAACCCTATGGGTGCTGGAGGTCAGATGCACGGG
CAGCCTGGCATCCCACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCATGCTTCCATG
GGCAACAGGCCTTATGGCCCTAACATGGCCAATATGCCACCTCAGGTTGGGTCAGGGATG
TGTCCCCCACCAGGGGGCATGAACCGGAAAACTCAAGAAACTGCTGTCGCCATGCATGTT
GCTGCCAACTCTATCCAGAACAGGTAAGGCTTGGGAAGTGAAGAGGGTATCAGTGCAGGG
AGACAAACTGTAGGCATTCAGGTCATTGAGATACTTCTGGACCTAAACCATGTCATCTTG
GTAAATAATGTGCTTTATTAAGAGTTCTTTAGAAAACTAGGTTTCCTTACAGTGAAAAAT
AGAACAAAAATGCTGATTTGTAAGCATCTTAGATTGATCTCAAATTTCACATGACCAGAT
ATCATATATAAAGAACCTTATAAAGCACATGTTATTTTGATTAGTAAAGTGAGTCTTCAG
AGTTTCTTCATTTCTTCTGGCAATCTAGATTCTTGGTTTCTAAAAGGATTTTTAATGATA
CACATGATTTGGGTCTGTGGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGTAGACTTAAGGTTGGTCTCTTTCCAGACCAAATATTGAATGATTCCCATTGTTTA
TTATCTTTGGAGTTTGAGTTGAGTGATAAATTGAGTTGCTAATTTGCATCTTCTCTCCTT
CCCCTTCCAGGAGGCTATCCCAGGCAGCCAAATTATAATGCCTTGCCCAATGCTAACTAC
CCCAGTGCAGGCATGGCTGGAAGTATGAACCCTATGGGTGCTGGAGGTCAGATGCACGGG
CAGCCTGGCATCCCACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCATGCTTCCATG
GGCAACAGGCCTTATGGCCCTAACATGGCCAATATGCCACCTCAGGTTGGGTCAGGGATG
TGTCCCCCACCAGGGGGCATGAACCGGAAAACTCAAGAAACTGCTGTCGCCATGCATGTT
GCTGCCAACTCTATCCAGAACAGGTAAGGCTTGGGAAGTGAAGAGGGTATCAGTGCAGGG
AGACAAACTGTAGGCATTCAGGTCATTGAGATACTTCTGGACCTAAACCATGTCATCTTG
GTAAATAATGTGCTTTATTAAGAGTTCTTTAGAAAACTAGGTTTCCTTACAGTGAAAAAT
AGAACAAAAATGCTGATTTGTAAGCATCTTAGATTGATCTCAAATTTCACATGACCAGAT
ATCATATATAAAGAACCTTATAAAGCACATGTTATTTTGATTAGTAAAGTGAGTCTTCAG
AGTTTCTTCATTTCTTCTGGCAATCTAGATTCTTGGTTTCTAAAAGGATTTTTAATGATA
CACATGATTTGGGTCTGTGGTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               177-416, - strand, RNAz p=0.982319

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               177-416, - strand, RNAz p=0.982319

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-483, gnl|bosTau2|chr2 (78604022-78604529)
               

               
               1-483, gnl|Hg17|chr1 (26773482-26773956)
               

               
               1-483, gnl|Mm7|chr4 (133072631-133072168)
               


               
               492-804, gnl|bosTau2|chr2 (78604573-78604866)
               

               
               492-804, gnl|Hg17|chr1 (26773969-26775070)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-483, gnl|bosTau2|chr2 (78604022-78604529)
               

               
               1-483, gnl|Hg17|chr1 (26773482-26773956)
               

               
               1-483, gnl|Mm7|chr4 (133072631-133072168)
               


               
               492-804, gnl|bosTau2|chr2 (78604573-78604866)
               

               
               492-804, gnl|Hg17|chr1 (26773969-26775070)

	1-483, gnl\|bosTau2\|chr2 (78604022-78604529)
	1-483, gnl\|Hg17\|chr1 (26773482-26773956)
	1-483, gnl\|Mm7\|chr4 (133072631-133072168)

	492-804, gnl\|bosTau2\|chr2 (78604573-78604866)
	492-804, gnl\|Hg17\|chr1 (26773969-26775070)