Non-Coding RNA Search

Ss1.1-Pig3-SRG8028B15.5

Sequence:


               
               GTAGGCTACAGTCCATGGGGTCACAAAGAGTCGGACACAACTAAGCAACTTCACTACACT
ACTAAGGACTATATTATTCAGAATAACACTAAGAAGTAGATACTCCGCTTGTTATCATCC
TGATATTCTAGAAAGAGCCCAGGTAACTTGCCCAAGGTCACACAGGTATTTGTCTTGCTA
ACCTAATATGACCTCATTCTGGGAGTGTGGGAGAAGAGGCTGCACAGCAAGGTTGGGATT
GAGTGAAGTCATTTTCTTCTCCTTGCTTGTGTTGGTTGATTGCCTTCTTCTTAGTGCCAC
ATAGAGTGTGTCAAGTGTCTTCACATTTCACAGGGGAGACTGAATGAAAGCTGCAGGAGT
ATCATGAAGAGCTCACTGAATGAGCCAACTGAACAACCGTTTTTGTTCTGTGTATCAAAC
CACCAGTGTCTGACCCCCTTTAAATCAAACCTGTACCCAGTCTCTTGTAACCAGGTAAGA
GTCACTGATTAAAGTGTTTGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGCTACAGTCCATGGGGTCACAAAGAGTCGGACACAACTAAGCAACTTCACTACACT
ACTAAGGACTATATTATTCAGAATAACACTAAGAAGTAGATACTCCGCTTGTTATCATCC
TGATATTCTAGAAAGAGCCCAGGTAACTTGCCCAAGGTCACACAGGTATTTGTCTTGCTA
ACCTAATATGACCTCATTCTGGGAGTGTGGGAGAAGAGGCTGCACAGCAAGGTTGGGATT
GAGTGAAGTCATTTTCTTCTCCTTGCTTGTGTTGGTTGATTGCCTTCTTCTTAGTGCCAC
ATAGAGTGTGTCAAGTGTCTTCACATTTCACAGGGGAGACTGAATGAAAGCTGCAGGAGT
ATCATGAAGAGCTCACTGAATGAGCCAACTGAACAACCGTTTTTGTTCTGTGTATCAAAC
CACCAGTGTCTGACCCCCTTTAAATCAAACCTGTACCCAGTCTCTTGTAACCAGGTAAGA
GTCACTGATTAAAGTGTTTGGGGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.69624
               

               
               196-302, + strand, RNAz p=0.97685

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.69624
               

               
               196-302, + strand, RNAz p=0.97685

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC036349, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC036349, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-504, gnl|bosTau2|chr8 (18675849-18676352)
               

               
               1-504, gnl|Hg17|chr9 (4591080-4590615)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr8 (18675849-18676352)
               

               
               1-504, gnl|Hg17|chr9 (4591080-4590615)

	40-159, - strand, RNAz p=0.69624
	196-302, + strand, RNAz p=0.97685

	1-504, gnl\|bosTau2\|chr8 (18675849-18676352)
	1-504, gnl\|Hg17\|chr9 (4591080-4590615)