Non-Coding RNA Search

Ss1.1-Pig3-SRG8028C04.3

Sequence:


               
               GAAGATCCTGTTTTACAGCTGAAGAGCTCTTAGGAGTTCTCTTCCAGAGCCCTTCTATTT
GTCCTAAAGAGGGGGAGAGAGGGCCAATTTGGGCACCTGTTTGTAAGTGCAGGTGACTAA
AACACCATCAGAATGTAAAAGCTGGTGGAAAAATGGTTCTAGAAGGATGGTCAGGAGAAC
ACATCATGCTCAATTGCTCAATCAGGTGCTTCAGTGTCATGCAACCGAGAGGTCTGAGAA
AGGATCAGGCACAGAAGCATATGCCCTCCTCCCCTTGGGCTGGCTTTTCTCTTGGGTATT
GGTGTAGACACCTGAGGGACTGAGCCCGTTGCTATTCTTGGTCAGCTCCCTTCTCAAAAT
AGCCAAGCCCCTCGTGCCTGGCATGTAATCATTCCACTTAATGGGTGTCCGCATTTGTGA
GACATTTGATTTATATAAAGTCAGCTCAGTTGCTAAGAAGCTCCATTAGCTCATAAATTA
TCCAGTTTCTTGATTTTTTTTCATCCTAGCCCAATCTTCCTAATTCTGCGTATTATGATT
TAATATATAGCGCATCATCTACTTCTGGTGGAAATGATCAGAACCACTAATTTATTATCA
TCACCAGTATCATCTGTGGATTGTAAGCATCTGGGCTCTCTGTTCTTTATTTCCAAGGAT
AATAACAACAGTCTGATAAAGGAGCTTCCAAACCAAAACTTGGGATCATTCTCACCCAAC
ATTACCCCGATTATAATCTAGACTGTAGACCCAGATCAACAGACTAGTCAAATGAGTGGA
GCTTTCTGAATATGATTTCTGTGCCTTTTCCCGCTCTAATCTCTCACCAACTTTTCCATC
CTTGAGTTTTAACCTTCCTGTTTTACATTTCAGGGAGCTATCTTGTATTTATAAAATGAG
AATTATTAATTGTCTCTTGGTCCCCTTGCGTTTTAATTAGACCCTGCAGAAACAACAAAA
TTCCTGTCACCAGAAACTGGAGGATCTTTGCAGCTGGGTGGGACAGGCAGAAAGAGCATT
GGCAGGCCACCAAGATAGAGCCACCCAGCAGGATCTCTCTGCTTTGCAGCAAAACCAAAG
TGACTTGAAGGTCAGTAAGAGTTAGCTCATTTGTTTCATTCCTTCAACAAGTATCTATAA
AGGTTTGCTGTGAGCCAGGCACAGTGCTTAGTGCTAGCAACGTACTCGTAAACATCTCTG
CTCTCATGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATCCTGTTTTACAGCTGAAGAGCTCTTAGGAGTTCTCTTCCAGAGCCCTTCTATTT
GTCCTAAAGAGGGGGAGAGAGGGCCAATTTGGGCACCTGTTTGTAAGTGCAGGTGACTAA
AACACCATCAGAATGTAAAAGCTGGTGGAAAAATGGTTCTAGAAGGATGGTCAGGAGAAC
ACATCATGCTCAATTGCTCAATCAGGTGCTTCAGTGTCATGCAACCGAGAGGTCTGAGAA
AGGATCAGGCACAGAAGCATATGCCCTCCTCCCCTTGGGCTGGCTTTTCTCTTGGGTATT
GGTGTAGACACCTGAGGGACTGAGCCCGTTGCTATTCTTGGTCAGCTCCCTTCTCAAAAT
AGCCAAGCCCCTCGTGCCTGGCATGTAATCATTCCACTTAATGGGTGTCCGCATTTGTGA
GACATTTGATTTATATAAAGTCAGCTCAGTTGCTAAGAAGCTCCATTAGCTCATAAATTA
TCCAGTTTCTTGATTTTTTTTCATCCTAGCCCAATCTTCCTAATTCTGCGTATTATGATT
TAATATATAGCGCATCATCTACTTCTGGTGGAAATGATCAGAACCACTAATTTATTATCA
TCACCAGTATCATCTGTGGATTGTAAGCATCTGGGCTCTCTGTTCTTTATTTCCAAGGAT
AATAACAACAGTCTGATAAAGGAGCTTCCAAACCAAAACTTGGGATCATTCTCACCCAAC
ATTACCCCGATTATAATCTAGACTGTAGACCCAGATCAACAGACTAGTCAAATGAGTGGA
GCTTTCTGAATATGATTTCTGTGCCTTTTCCCGCTCTAATCTCTCACCAACTTTTCCATC
CTTGAGTTTTAACCTTCCTGTTTTACATTTCAGGGAGCTATCTTGTATTTATAAAATGAG
AATTATTAATTGTCTCTTGGTCCCCTTGCGTTTTAATTAGACCCTGCAGAAACAACAAAA
TTCCTGTCACCAGAAACTGGAGGATCTTTGCAGCTGGGTGGGACAGGCAGAAAGAGCATT
GGCAGGCCACCAAGATAGAGCCACCCAGCAGGATCTCTCTGCTTTGCAGCAAAACCAAAG
TGACTTGAAGGTCAGTAAGAGTTAGCTCATTTGTTTCATTCCTTCAACAAGTATCTATAA
AGGTTTGCTGTGAGCCAGGCACAGTGCTTAGTGCTAGCAACGTACTCGTAAACATCTCTG
CTCTCATGAAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-193, - strand, RNAz p=0.984613
               

               
               263-370, - strand, RNAz p=0.593704

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-193, - strand, RNAz p=0.984613
               

               
               263-370, - strand, RNAz p=0.593704

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-1211, gnl|bosTau2|chr3 (73248320-73247118)
               

               
               1-1211, gnl|Hg17|chr1 (39483309-39484781)
               

               
               1-1211, gnl|Mm7|chr4 (122906817-122905620)
               


               
               730-1042, gnl|bosTau2|chr17 (12050567-12050255)
               

               
               730-1042, gnl|Hg17|chr1 (39484039-39484344)
               

               
               730-1042, gnl|Mm7|chr4 (122906085-122905779)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1211, gnl|bosTau2|chr3 (73248320-73247118)
               

               
               1-1211, gnl|Hg17|chr1 (39483309-39484781)
               

               
               1-1211, gnl|Mm7|chr4 (122906817-122905620)
               


               
               730-1042, gnl|bosTau2|chr17 (12050567-12050255)
               

               
               730-1042, gnl|Hg17|chr1 (39484039-39484344)
               

               
               730-1042, gnl|Mm7|chr4 (122906085-122905779)

	1-193, - strand, RNAz p=0.984613
	263-370, - strand, RNAz p=0.593704

	1-1211, gnl\|bosTau2\|chr3 (73248320-73247118)
	1-1211, gnl\|Hg17\|chr1 (39483309-39484781)
	1-1211, gnl\|Mm7\|chr4 (122906817-122905620)

	730-1042, gnl\|bosTau2\|chr17 (12050567-12050255)
	730-1042, gnl\|Hg17\|chr1 (39484039-39484344)
	730-1042, gnl\|Mm7\|chr4 (122906085-122905779)