Non-Coding RNA Search

Ss1.1-Pig3-SRG8028I19.5

Sequence:


               
               GAAGGGCAGCGGTACCTGGCAGACATCTTCACCACGTGCGTGGACATTCGCTGGCGGTGG
ATGCTGGTTATCTTCTGCCTGGCCTTCGTCCTCTCGTGGCTATTTTTCGGCTGTGTGTTT
TGGTTGATAGCTCTGCTCCATGGGGACCTGGATGCATCCAAGGAGAGCAAAGCTTGTGTG
TCCGAGGTCAACAGCTTCACGGCCGCCTTCCTTTTCTCCATTGAGACCCAGACGACCATC
GGCTACGGCTTCAGGTGTGTCACCGACGAATGCCCGATCGCTGTTTTCATGGTGGTCTTC
CAGTCCATCGTGGGCTGCATCATCGACGCCTTCATCATCGGAGCAGTCATGGCCAAGATG
GCCAAGCCCAAGAAGAGAAACGAGACCCTGGTCTTCAGTCACAACGCGGTGATCGCCATG
AGAGATGGCAAGCTCTGCTTGATGTGGCGGGTGGGCAACCTTCGGAAAAGCCACCTGGTG
GAGGCTCACGTGCGCGCGCAGCTCCTCAAATCCAGAATTACTTCTGAAGGGGAGTACATC
CCCCTGGATCAAATAGATATCAACGTTGGGTTTGACAGTGGCATTGACCGTATATTTCTG
GTGTCCCCAATCACGATCGTCCACGAAATAGATGAAGACAGTCCTTTATATGACCTGAGT
AAGCAGGACATTGACAATGCAGACTTTGAAATTGTTGTGATCCTAGAAGGTATGGTCGAA
GCCACCGCCATGACCACACAGTGCCGGAGCTCGTATCTGGCCAACGAAATCCTCTGGGGC
CACCGCTATGAGCCTGTTCTCTTTGAAGAGAAGCATTACTACAAGGTGGACTATTCGAGG
TTCCACAAGACTTACGAGGTACCCAACACTCCCCTTTGCAGTGCCAGGGACTTAGCAGAA
AAGAAATACATCCTGTCCAACGCTAACTCATTTTGCTATGAAAATGAAGTGGCCCTCACG
AGCAAAGAGGAAGATGACAGTGAAAACGGAGTCCCAGAAAGCACGAGTACGGACACCCCC
CCGGACATAGACCTTCACAACCAGGCAAGCGTACCTCTAGAACCCAGGCCCTTGCGGCGA
GAGTCAGAGATATGACTGGACCCGCCTCTGGAATAGTTACTTTAAAACACAGTCTGTTGG
TCAAAGGCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGCAGCGGTACCTGGCAGACATCTTCACCACGTGCGTGGACATTCGCTGGCGGTGG
ATGCTGGTTATCTTCTGCCTGGCCTTCGTCCTCTCGTGGCTATTTTTCGGCTGTGTGTTT
TGGTTGATAGCTCTGCTCCATGGGGACCTGGATGCATCCAAGGAGAGCAAAGCTTGTGTG
TCCGAGGTCAACAGCTTCACGGCCGCCTTCCTTTTCTCCATTGAGACCCAGACGACCATC
GGCTACGGCTTCAGGTGTGTCACCGACGAATGCCCGATCGCTGTTTTCATGGTGGTCTTC
CAGTCCATCGTGGGCTGCATCATCGACGCCTTCATCATCGGAGCAGTCATGGCCAAGATG
GCCAAGCCCAAGAAGAGAAACGAGACCCTGGTCTTCAGTCACAACGCGGTGATCGCCATG
AGAGATGGCAAGCTCTGCTTGATGTGGCGGGTGGGCAACCTTCGGAAAAGCCACCTGGTG
GAGGCTCACGTGCGCGCGCAGCTCCTCAAATCCAGAATTACTTCTGAAGGGGAGTACATC
CCCCTGGATCAAATAGATATCAACGTTGGGTTTGACAGTGGCATTGACCGTATATTTCTG
GTGTCCCCAATCACGATCGTCCACGAAATAGATGAAGACAGTCCTTTATATGACCTGAGT
AAGCAGGACATTGACAATGCAGACTTTGAAATTGTTGTGATCCTAGAAGGTATGGTCGAA
GCCACCGCCATGACCACACAGTGCCGGAGCTCGTATCTGGCCAACGAAATCCTCTGGGGC
CACCGCTATGAGCCTGTTCTCTTTGAAGAGAAGCATTACTACAAGGTGGACTATTCGAGG
TTCCACAAGACTTACGAGGTACCCAACACTCCCCTTTGCAGTGCCAGGGACTTAGCAGAA
AAGAAATACATCCTGTCCAACGCTAACTCATTTTGCTATGAAAATGAAGTGGCCCTCACG
AGCAAAGAGGAAGATGACAGTGAAAACGGAGTCCCAGAAAGCACGAGTACGGACACCCCC
CCGGACATAGACCTTCACAACCAGGCAAGCGTACCTCTAGAACCCAGGCCCTTGCGGCGA
GAGTCAGAGATATGACTGGACCCGCCTCTGGAATAGTTACTTTAAAACACAGTCTGTTGG
TCAAAGGCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|763075|emb|CAA88835.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|763075|emb|CAA88835.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               119-238, - strand, RNAz p=0.904878
               

               
               279-398, - strand, RNAz p=0.52393
               

               
               458-958, - strand, RNAz p=0.982031

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-238, - strand, RNAz p=0.904878
               

               
               279-398, - strand, RNAz p=0.52393
               

               
               458-958, - strand, RNAz p=0.982031

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1152, gnl|bosTau2|chr19 (51237028-51235876)
               

               
               1-1152, gnl|Hg17|chr17 (65682964-65684120)
               

               
               1-1152, gnl|Mm7|chr11 (111181013-111182175)
               


               
               22-885, gnl|bosTau2|chr15 (24378260-24379127)
               

               
               22-885, gnl|Hg17|chr11 (17366043-17365177)
               

               
               22-885, gnl|Mm7|chr7 (42275960-42275094)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr19 (51237028-51235876)
               

               
               1-1152, gnl|Hg17|chr17 (65682964-65684120)
               

               
               1-1152, gnl|Mm7|chr11 (111181013-111182175)
               


               
               22-885, gnl|bosTau2|chr15 (24378260-24379127)
               

               
               22-885, gnl|Hg17|chr11 (17366043-17365177)
               

               
               22-885, gnl|Mm7|chr7 (42275960-42275094)

	119-238, - strand, RNAz p=0.904878
	279-398, - strand, RNAz p=0.52393
	458-958, - strand, RNAz p=0.982031

	1-1152, gnl\|bosTau2\|chr19 (51237028-51235876)
	1-1152, gnl\|Hg17\|chr17 (65682964-65684120)
	1-1152, gnl\|Mm7\|chr11 (111181013-111182175)

	22-885, gnl\|bosTau2\|chr15 (24378260-24379127)
	22-885, gnl\|Hg17\|chr11 (17366043-17365177)
	22-885, gnl\|Mm7\|chr7 (42275960-42275094)