Non-Coding RNA Search

Ss1.1-Pig3-SRG8028O10.3

Sequence:


               
               CAGTGGCAGCCAAGCCCAGACGGGTGTTCCCAAGTTCAACAATCTCCTTTGGAACGTTTT
AACTGGCCGGGTGAGTGGGTCTGTCCTGGCTGAGGGACCTGGGGATCTGGCCTCAGGGGA
CTCCAGTCCAAGAGGAACCCCCACCCCTCCAAGAGCATGTCGGCTTCTAGGGGGACGGTC
TCACGTGGACAGGCTGGTTGGGTCAGCAATGGGGTGAGAGAGGCTGAGGCCACTGTGCAC
AGCCAGGTCCAAGGACATGTGCCCACGGCCCTCAGAGTCCAGCTGGGGTGGGGTACCAGG
GACAAGAGAGGTAAAGGGCCCAGGCTCCTGGGATAAGCACCCCCCTGCCCTGGAACTGCT
GAGTGGTTCCAGCGCAGGCTCCTGTGCTCCAGTCCCTGCTCTTCCTCCAAGCTGTGTGTC
CTCAGACAAGGTGCCTGACCACTCTGAACCTCTGTGAAGTGGGGGTACGCTTACTCCCTA
CCTGATGGGGTTATGAGAGGATTGGTGGGTTAATACAAAGACTTAGCACACAGCGGGCTC
AGTTGTCACCCACGTCCCTGGGCTCAGTTGTCACCCACGTCCCCAGGCCTTCAACAACAC
CTACCTCTTTTACGGAGCGTATCGGGCGCCGCCCGAGAGCAGCTCTGCGTACAACATCCG
CCTGGCCTACCTCCTAAGCCCACTGGCCTGCCTGCTCCTCTGCTTCTGTGGGATTCTCCG
GCGGTGAGAGCAGAGCCCCTGCCTCTACCCCTTTCCAGGGGGTCTTCCTGAATCAGCTCT
CCCCCTGGCGTGGTACCCCTCCAAGTTAACAGGAAGCCCCACCCCTGCCCCCATTCAGTA
AGGCTCATGGGTGGTTCCAGGGCCTGAACTCTGCCTCCCCAACTGCAGACCTCAGGGGTG
GGAGCCACCAGCCCCATATCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGGCAGCCAAGCCCAGACGGGTGTTCCCAAGTTCAACAATCTCCTTTGGAACGTTTT
AACTGGCCGGGTGAGTGGGTCTGTCCTGGCTGAGGGACCTGGGGATCTGGCCTCAGGGGA
CTCCAGTCCAAGAGGAACCCCCACCCCTCCAAGAGCATGTCGGCTTCTAGGGGGACGGTC
TCACGTGGACAGGCTGGTTGGGTCAGCAATGGGGTGAGAGAGGCTGAGGCCACTGTGCAC
AGCCAGGTCCAAGGACATGTGCCCACGGCCCTCAGAGTCCAGCTGGGGTGGGGTACCAGG
GACAAGAGAGGTAAAGGGCCCAGGCTCCTGGGATAAGCACCCCCCTGCCCTGGAACTGCT
GAGTGGTTCCAGCGCAGGCTCCTGTGCTCCAGTCCCTGCTCTTCCTCCAAGCTGTGTGTC
CTCAGACAAGGTGCCTGACCACTCTGAACCTCTGTGAAGTGGGGGTACGCTTACTCCCTA
CCTGATGGGGTTATGAGAGGATTGGTGGGTTAATACAAAGACTTAGCACACAGCGGGCTC
AGTTGTCACCCACGTCCCTGGGCTCAGTTGTCACCCACGTCCCCAGGCCTTCAACAACAC
CTACCTCTTTTACGGAGCGTATCGGGCGCCGCCCGAGAGCAGCTCTGCGTACAACATCCG
CCTGGCCTACCTCCTAAGCCCACTGGCCTGCCTGCTCCTCTGCTTCTGTGGGATTCTCCG
GCGGTGAGAGCAGAGCCCCTGCCTCTACCCCTTTCCAGGGGGTCTTCCTGAATCAGCTCT
CCCCCTGGCGTGGTACCCCTCCAAGTTAACAGGAAGCCCCACCCCTGCCCCCATTCAGTA
AGGCTCATGGGTGGTTCCAGGGCCTGAACTCTGCCTCCCCAACTGCAGACCTCAGGGGTG
GGAGCCACCAGCCCCATATCCCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               298-395, + strand, RNAz p=0.638776

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-395, + strand, RNAz p=0.638776

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-750, gnl|bosTau2|chr19 (47897193-47896432)
               

               
               2-750, gnl|Hg17|chr17 (73640481-73641265)
               

               
               2-750, gnl|Mm7|chr11 (117893172-117894009)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-750, gnl|bosTau2|chr19 (47897193-47896432)
               

               
               2-750, gnl|Hg17|chr17 (73640481-73641265)
               

               
               2-750, gnl|Mm7|chr11 (117893172-117894009)

	2-750, gnl\|bosTau2\|chr19 (47897193-47896432)
	2-750, gnl\|Hg17\|chr17 (73640481-73641265)
	2-750, gnl\|Mm7\|chr11 (117893172-117894009)