Non-Coding RNA Search

Ss1.1-Pig3-SRG8028P17.3

Sequence:


               
               CAAAATCAGAAT------------------------------------------------
------------------------GCTGTGGCGCAAGTTCCATCCCTAACCTGGGGATTT
TGGCATGCCATAGGTGCAGCCAAAAAAAATAGAAGGAGAAGAAGAAGAAGAAAGGTCGTT
GGATAAAGTCCTTCTTCACTGAACCTTTCTTGAAATTAATTTGTTAACTCTGTCTTCCCT
CCTTCTAGGGAAGTGGAAGCTTTGGGGGCTTTTAGGTATGCTTTAGTTATTTATGGAGTA
GTTCAATTCACCCAGTACTCCTCTCAGTTAAGTGCTCTTTAAGAGTAGCACTTAGAACAA
CATGAAACAATTCTTTTTATTTGCTGTGGACACAATGAGACAGAAATAAAGCTATTGCCA
CCCCATCCTCCTTTCTTGCCTATTCCCTGGCCTAAGGGTGGAAGACTTTCTCCCAGGAAA
GGATGCAACTTACAATCGATGTTGAATTAATAGTCCCCTCTTGTGCCTGAACTAAGCAGC
TAGACTCCCATCTTTTCCATGTCAGACAGAGTCAGGGAACTTTGGGAAAGGAGAGAAAAG
GGAACTGGCTATTTCTCTTTTCTTTCATTTTCCTTCACACATGACCTACTCCTTCAGTAA
ATAATACATATATATATATATATACACTTTAAATATACTTTATATATATACATACATAAT
TTTTAATTTCTGTGAGAGGCGATAGCATTCAGTCTCACAGGAGGTTTCCCAGAGAGTCCC
CCCAAGGAGAAGTACTGCTTATATTTACTCATTAATAGTATTTAAGCTCCAGGTCCTTAT
CAATCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAATCAGAAT------------------------------------------------
------------------------GCTGTGGCGCAAGTTCCATCCCTAACCTGGGGATTT
TGGCATGCCATAGGTGCAGCCAAAAAAAATAGAAGGAGAAGAAGAAGAAGAAAGGTCGTT
GGATAAAGTCCTTCTTCACTGAACCTTTCTTGAAATTAATTTGTTAACTCTGTCTTCCCT
CCTTCTAGGGAAGTGGAAGCTTTGGGGGCTTTTAGGTATGCTTTAGTTATTTATGGAGTA
GTTCAATTCACCCAGTACTCCTCTCAGTTAAGTGCTCTTTAAGAGTAGCACTTAGAACAA
CATGAAACAATTCTTTTTATTTGCTGTGGACACAATGAGACAGAAATAAAGCTATTGCCA
CCCCATCCTCCTTTCTTGCCTATTCCCTGGCCTAAGGGTGGAAGACTTTCTCCCAGGAAA
GGATGCAACTTACAATCGATGTTGAATTAATAGTCCCCTCTTGTGCCTGAACTAAGCAGC
TAGACTCCCATCTTTTCCATGTCAGACAGAGTCAGGGAACTTTGGGAAAGGAGAGAAAAG
GGAACTGGCTATTTCTCTTTTCTTTCATTTTCCTTCACACATGACCTACTCCTTCAGTAA
ATAATACATATATATATATATATACACTTTAAATATACTTTATATATATACATACATAAT
TTTTAATTTCTGTGAGAGGCGATAGCATTCAGTCTCACAGGAGGTTTCCCAGAGAGTCCC
CCCAAGGAGAAGTACTGCTTATATTTACTCATTAATAGTATTTAAGCTCCAGGTCCTTAT
CAATCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               187-328, - strand, RNAz p=0.993786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-328, - strand, RNAz p=0.993786

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               107-328, gnl|bosTau2|chr20 (30078035-30077810)
               

               
               107-328, gnl|Hg17|chr5 (24532660-24532437)
               


               
               456-611, gnl|bosTau2|chr20 (30077032-30076883)
               

               
               456-611, gnl|Hg17|chr5 (24532314-24532158)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-328, gnl|bosTau2|chr20 (30078035-30077810)
               

               
               107-328, gnl|Hg17|chr5 (24532660-24532437)
               


               
               456-611, gnl|bosTau2|chr20 (30077032-30076883)
               

               
               456-611, gnl|Hg17|chr5 (24532314-24532158)

	107-328, gnl\|bosTau2\|chr20 (30078035-30077810)
	107-328, gnl\|Hg17\|chr5 (24532660-24532437)

	456-611, gnl\|bosTau2\|chr20 (30077032-30076883)
	456-611, gnl\|Hg17\|chr5 (24532314-24532158)