Non-Coding RNA Search

Ss1.1-Pig4-TMW8001J17.5

Sequence:


               
               GCGGCCGCTCGCGATCTAGAACTAGTCTTTTTTTTTAAAGAGTTAATGAATAATAAATAT
CCTGACAGTTGTTTCTTCTGGTGAGTTGTCTACCCCTTTGTACAAATTGGCATTTCTAAT
ACCATAGTAATTGATTTCTTGATACTAGTTTAGCTGTGATAGAGAGCTGCTTCTATCTGG
ATTAAATGAAATTTGATTCAAATTTCCAAGTTAGAATAGATGTTCTTAAGTCTCATTGCT
TTTATGTTGAAGTAGCATTTCCCTTTCCTGCAGTTTTGCTGTTAACATAAAGGTGGCATT
TTAAAATAATTACTTCAAAATACATCTTCAGCCGTTATCATAAAAACAAGAAAACCTGTT
ACCAATATCTTCTAGCATTTTTTTCCTCAGTGATCTCAAGATTGTCTTGGTTCCAGTGAG
GGTTAGCTACTAAAATGGCACCTCTCTTAGCAGTGATGAGGCTCAGGATATCAACACCAA
TGTCAAGATAAGAATCCCTTCTAAAAATGGTATTTCCCTTTTACAAAAGTGGGAAAGTCT
CAAACTACCTCATCTTTATTGTGGCGCTTTTGTAGATCACTGAGAAGCTTCTCTTATTTA
CCAATATAACGCTTCCTAAATATCCACCTTTGGTGAAAGAAAATTAATAGTATGGTAAGA
CTCTACCCATGATTATAGTTTTTTATCAGAATTTGATATTGAGACTTTCTGTTTCTATGA
AACAATATTGTTTTAAATATTTTTCTTTTAAAAATAACTTTCTATCAGTACAGAAAAACC
TAAGGGATGACTAGGTAATGACTATTCTGTTAAAAGATAATTTTATAAAGATAAATGAAA
TATAATTATGTTGTCTTTTATAATGGTAAAAATTAGTGTTTATATGAGAATCAAGATCTA
AGTAGCTTTTCATATATTCACACTGGTTGCTTGTGATATATTTTCTCTCACTGTCTTATT
TTTTCAACTTCAAGGTATTGGTAGCTGTTAACATTTTCAAGTACTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCGCGATCTAGAACTAGTCTTTTTTTTTAAAGAGTTAATGAATAATAAATAT
CCTGACAGTTGTTTCTTCTGGTGAGTTGTCTACCCCTTTGTACAAATTGGCATTTCTAAT
ACCATAGTAATTGATTTCTTGATACTAGTTTAGCTGTGATAGAGAGCTGCTTCTATCTGG
ATTAAATGAAATTTGATTCAAATTTCCAAGTTAGAATAGATGTTCTTAAGTCTCATTGCT
TTTATGTTGAAGTAGCATTTCCCTTTCCTGCAGTTTTGCTGTTAACATAAAGGTGGCATT
TTAAAATAATTACTTCAAAATACATCTTCAGCCGTTATCATAAAAACAAGAAAACCTGTT
ACCAATATCTTCTAGCATTTTTTTCCTCAGTGATCTCAAGATTGTCTTGGTTCCAGTGAG
GGTTAGCTACTAAAATGGCACCTCTCTTAGCAGTGATGAGGCTCAGGATATCAACACCAA
TGTCAAGATAAGAATCCCTTCTAAAAATGGTATTTCCCTTTTACAAAAGTGGGAAAGTCT
CAAACTACCTCATCTTTATTGTGGCGCTTTTGTAGATCACTGAGAAGCTTCTCTTATTTA
CCAATATAACGCTTCCTAAATATCCACCTTTGGTGAAAGAAAATTAATAGTATGGTAAGA
CTCTACCCATGATTATAGTTTTTTATCAGAATTTGATATTGAGACTTTCTGTTTCTATGA
AACAATATTGTTTTAAATATTTTTCTTTTAAAAATAACTTTCTATCAGTACAGAAAAACC
TAAGGGATGACTAGGTAATGACTATTCTGTTAAAAGATAATTTTATAAAGATAAATGAAA
TATAATTATGTTGTCTTTTATAATGGTAAAAATTAGTGTTTATATGAGAATCAAGATCTA
AGTAGCTTTTCATATATTCACACTGGTTGCTTGTGATATATTTTCTCTCACTGTCTTATT
TTTTCAACTTCAAGGTATTGGTAGCTGTTAACATTTTCAAGTACTGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               453-563, - strand, RNAz p=0.931519

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-563, - strand, RNAz p=0.931519

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               27-1008, gnl|bosTau2|chr10 (45575505-45574538)
               

               
               27-1008, gnl|Hg17|chr14 (54582151-54583131)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-1008, gnl|bosTau2|chr10 (45575505-45574538)
               

               
               27-1008, gnl|Hg17|chr14 (54582151-54583131)

	27-1008, gnl\|bosTau2\|chr10 (45575505-45574538)
	27-1008, gnl\|Hg17\|chr14 (54582151-54583131)