Ss1.1-Pig4-TMW8001M04.5
|
AAGAGGCCATGGAGGCAGCCGGGAGGGGCCAACAGAAGAACCAGGCCAGGAAGATGGGCT
CTCCCAAGGACCAGCCCACCTGTTAGGGGGCTCTAAATTCAGGGGACCGTCCCTGGCCCC
TCCCCAAAGCCCCACTAGGCATCCTCAGCATCGCAACATCAAAGGGGTGTGTCAGAGCAT
TCCGGAAGGTCTCAGGGTCCCAGCTACTCCTTCCTCCCAGACCTGCGGGGCCAGCCCTCA
TACTTCAAGAATAGTCTTAAGAAGATTTTGCTCCATCAGATACCTGCCCTGGGGCCCTTC
AGCAGAGGTCATTCACAATTCGCCTCTGTCAAGAAGGCCAACCAGCCCCACGCTACACAG
GCCCCCAAGCTCAAGGCCGTGCTCACCCACAACTCCTCGGGGGAAGGTTCTGGGCACCGC
AGGCGGTGCTGCCCTTTCCGAGTGCGGTTCGCGGACGAGACGCTCCGGGACACAGCGCTT
CGCTACTGGGAGCGCAGCTGTGCAGTCCGGCAGGGCATCACCGGGAACAGGCCAGCCGGC
CGGTCAGCAGCATCGGAGCGGGTGTTTGGCAGTGTCGGGCGATGGCTGGAGAGTTTGCCC
AAAGCCCTGTCCACCCTGGAGCCAAAGGACCACCTCTCTGAGGACACCTGCACGAACAGC
CACCTGCCCTTCATCCCCAGGGCCACTGCCCAGAGACAGCGGGGAGACCTCAAAACCTTC
CTGGAGCAGATGGAGGAATCACCCTTTTCCTGGACCCAGAAGTTGGAGTCCTTCTTGCCC
AGCTTGGTTTTGCACACGGTCCTGAAACGAGGCCGCCGGAAGGGGTACCAGCTCCTCCTG
CCTTGGGCATCGTCCCGCACTCGGAGGTGAATGGCCGCTGTGCCAAAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGAGGCCATGGAGGCAGCCGGGAGGGGCCAACAGAAGAACCAGGCCAGGAAGATGGGCT
CTCCCAAGGACCAGCCCACCTGTTAGGGGGCTCTAAATTCAGGGGACCGTCCCTGGCCCC
TCCCCAAAGCCCCACTAGGCATCCTCAGCATCGCAACATCAAAGGGGTGTGTCAGAGCAT
TCCGGAAGGTCTCAGGGTCCCAGCTACTCCTTCCTCCCAGACCTGCGGGGCCAGCCCTCA
TACTTCAAGAATAGTCTTAAGAAGATTTTGCTCCATCAGATACCTGCCCTGGGGCCCTTC
AGCAGAGGTCATTCACAATTCGCCTCTGTCAAGAAGGCCAACCAGCCCCACGCTACACAG
GCCCCCAAGCTCAAGGCCGTGCTCACCCACAACTCCTCGGGGGAAGGTTCTGGGCACCGC
AGGCGGTGCTGCCCTTTCCGAGTGCGGTTCGCGGACGAGACGCTCCGGGACACAGCGCTT
CGCTACTGGGAGCGCAGCTGTGCAGTCCGGCAGGGCATCACCGGGAACAGGCCAGCCGGC
CGGTCAGCAGCATCGGAGCGGGTGTTTGGCAGTGTCGGGCGATGGCTGGAGAGTTTGCCC
AAAGCCCTGTCCACCCTGGAGCCAAAGGACCACCTCTCTGAGGACACCTGCACGAACAGC
CACCTGCCCTTCATCCCCAGGGCCACTGCCCAGAGACAGCGGGGAGACCTCAAAACCTTC
CTGGAGCAGATGGAGGAATCACCCTTTTCCTGGACCCAGAAGTTGGAGTCCTTCTTGCCC
AGCTTGGTTTTGCACACGGTCCTGAAACGAGGCCGCCGGAAGGGGTACCAGCTCCTCCTG
CCTTGGGCATCGTCCCGCACTCGGAGGTGAATGGCCGCTGTGCCAAAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
8-139, gnl|bosTau2|chr11 (79401422-79401289) |
|
8-139, gnl|Hg17|chr9 (129463783-129463662) |
|
8-139, gnl|Mm7|chr2 (30810981-30810861) |
| |
|
609-766, gnl|bosTau2|chr11 (79437605-79437448) |
|
609-766, gnl|canFam2|chr9 (57527618-57527261) |
|
609-766, gnl|dasNov1|scaffold_17925 (1591-1959) |
|
609-766, gnl|echTel1|scaffold_303937 (3035-2695) |
|
609-766, gnl|hg17|chr9 (129454782-129455153) |
|
609-766, gnl|Hg17|chr9 (129455084-129454903) |
|
609-766, gnl|loxAfr1|scaffold_15517 (4706-4362) |
|
609-766, gnl|mm7|chr2 (30803311-30803659) |
|
609-766, gnl|Mm7|chr2 (30803594-30803419) |
|
609-766, gnl|panTro1|chr11 (114315268-114315639) |
|
609-766, gnl|rn3|chr3 (9743128-9743448) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
8-139, gnl|bosTau2|chr11 (79401422-79401289) |
|
8-139, gnl|Hg17|chr9 (129463783-129463662) |
|
8-139, gnl|Mm7|chr2 (30810981-30810861) |
| |
|
609-766, gnl|bosTau2|chr11 (79437605-79437448) |
|
609-766, gnl|canFam2|chr9 (57527618-57527261) |
|
609-766, gnl|dasNov1|scaffold_17925 (1591-1959) |
|
609-766, gnl|echTel1|scaffold_303937 (3035-2695) |
|
609-766, gnl|hg17|chr9 (129454782-129455153) |
|
609-766, gnl|Hg17|chr9 (129455084-129454903) |
|
609-766, gnl|loxAfr1|scaffold_15517 (4706-4362) |
|
609-766, gnl|mm7|chr2 (30803311-30803659) |
|
609-766, gnl|Mm7|chr2 (30803594-30803419) |
|
609-766, gnl|panTro1|chr11 (114315268-114315639) |
|
609-766, gnl|rn3|chr3 (9743128-9743448) |