Non-Coding RNA Search

Ss1.1-Pig4-TMW8001N04.5

Sequence:


               
               GCAGTCTCTCCGGAGACACTGCGATCTTAGCGTCAGCGAGAAGAGGGTGAGGAGGCGCCC
GAGCCCGGTCTTTGCACCCGTTCTCGCCCTCAGCTCCCTACCAGCATCTCCACCATGCAG
TCCCGGGAAGAAGCTTCGCGCTCTCGCCGCCTCGCCAGTCCCCGCGGTGGAAAGCGGCCT
AAAAGGGTTCACAAACCCACGGTTTCGGCTTTTTTCACGGGGCCGGAGGAGTTGAAGGAC
ACGGCCCATTCCGCAGCCTTGCTGGCACAGCTCAAGTCCTTCTACGACGCGCGGCTCCTC
TGTGATGTGACCATCGAGGTGGTCACGCCTGGCAGCGGGCCTGGCACGGGCCGCCTCTTT
CCCTGCAACCGTAACGTGCTGGCCGCCGCGTGTCCCTACTTCAAGAGCATGTTCACCGGC
GGCATGTACGAGAGCCATCAGACGAACGTGACCATGCACGACGTAGATGCCGAATCCTTC
GAGGTGCTGGTCGATTACTGCTACACGGGTCGCGTGTCCCTGAGTGAATCCAACGTGGAG
CGCCTTTACGCGGCCTCGGACATGCTGCAGCTGGAGTATGTGCGGGAAGCCTGTGCCTCG
TTCCTAGCCCGCCGCCTTGACCTGGCCAACTGCACGGCCATCTTCAAGTTCGCCGACGCC
TTCGGCCATCGCAAGCTGCGGTCGCAGGCCCAGTCCTTTATCGCGCACAACTTCAAGCAG
CTCAGCCAGATGGGTTCGATCCGCGAGGAGTCTCTGGCCGATCTGACCCTGGCCCAACTG
CTGACTGTCTTGCGCCTGGATAGTCTGAACATTGAGCATGAGCAGACTGTGTGTCACGCC
GCGGTGCAGTGGTTGGAGGCGGCTCCCAAGGAGCGGGGTCCCAGCGCTGCCGAAGTCTTC
AAGTGTGTCCGCTGGACACACTTCACCGATGAAGATCGGAATTACCTGGAAGAGCTGTTG
ACCAAACCTATTGTGAAGAAGTACTCGTCTGCCCCTTATGGAAGGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTCTCTCCGGAGACACTGCGATCTTAGCGTCAGCGAGAAGAGGGTGAGGAGGCGCCC
GAGCCCGGTCTTTGCACCCGTTCTCGCCCTCAGCTCCCTACCAGCATCTCCACCATGCAG
TCCCGGGAAGAAGCTTCGCGCTCTCGCCGCCTCGCCAGTCCCCGCGGTGGAAAGCGGCCT
AAAAGGGTTCACAAACCCACGGTTTCGGCTTTTTTCACGGGGCCGGAGGAGTTGAAGGAC
ACGGCCCATTCCGCAGCCTTGCTGGCACAGCTCAAGTCCTTCTACGACGCGCGGCTCCTC
TGTGATGTGACCATCGAGGTGGTCACGCCTGGCAGCGGGCCTGGCACGGGCCGCCTCTTT
CCCTGCAACCGTAACGTGCTGGCCGCCGCGTGTCCCTACTTCAAGAGCATGTTCACCGGC
GGCATGTACGAGAGCCATCAGACGAACGTGACCATGCACGACGTAGATGCCGAATCCTTC
GAGGTGCTGGTCGATTACTGCTACACGGGTCGCGTGTCCCTGAGTGAATCCAACGTGGAG
CGCCTTTACGCGGCCTCGGACATGCTGCAGCTGGAGTATGTGCGGGAAGCCTGTGCCTCG
TTCCTAGCCCGCCGCCTTGACCTGGCCAACTGCACGGCCATCTTCAAGTTCGCCGACGCC
TTCGGCCATCGCAAGCTGCGGTCGCAGGCCCAGTCCTTTATCGCGCACAACTTCAAGCAG
CTCAGCCAGATGGGTTCGATCCGCGAGGAGTCTCTGGCCGATCTGACCCTGGCCCAACTG
CTGACTGTCTTGCGCCTGGATAGTCTGAACATTGAGCATGAGCAGACTGTGTGTCACGCC
GCGGTGCAGTGGTTGGAGGCGGCTCCCAAGGAGCGGGGTCCCAGCGCTGCCGAAGTCTTC
AAGTGTGTCCGCTGGACACACTTCACCGATGAAGATCGGAATTACCTGGAAGAGCTGTTG
ACCAAACCTATTGTGAAGAAGTACTCGTCTGCCCCTTATGGAAGGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61844017|ref|XP_596497.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844017|ref|XP_596497.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               681-880, + strand, RNAz p=0.904192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               681-880, + strand, RNAz p=0.904192

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr12 (3032612-3031606)
               

               
               1-1008, gnl|Hg17|chr13 (40604759-40603755)
               

               
               1-1008, gnl|Mm7|chr14 (74107312-74108311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr12 (3032612-3031606)
               

               
               1-1008, gnl|Hg17|chr13 (40604759-40603755)
               

               
               1-1008, gnl|Mm7|chr14 (74107312-74108311)

	1-1008, gnl\|bosTau2\|chr12 (3032612-3031606)
	1-1008, gnl\|Hg17\|chr13 (40604759-40603755)
	1-1008, gnl\|Mm7\|chr14 (74107312-74108311)