Non-Coding RNA Search

Ss1.1-Pig4-TMW8002F03.5

Sequence:


               
               TTTACCTCTTATTTGAAAGGCAGTTTGTTTCATCTCTTCTTTTTCCAGGGTAGTCACTTG
TGTCTGGAAGAGGGACATAGCAGAGTCTATAATGGGAGTGGCCTTACAGAGGGATAGTCA
CACCAGAACAAGGGAAGGACAGCTATGGGGGCATCAAAAGTCCTGAAGTGAAGGGCCAGG
ATTAGGGGACAGTGCCTCACTGAAGTCTTGTTATAGAATCAGTGAGATGTTCACACTCAC
TACTGCAAGTGTCAGCCCCACTCCTACTCAATGGCTTCTGATTGGGAAGTGGAGTAGGTT
TCTATAAGGAAAATGACAGATACCTTCTCACCACACCCAGTGTAGTTAGACTATTGTATT
ATGATATGGTTGCCCTTCAGGCCACAGGGTAAGACCATACCACCATGGCTGGGTTTTGGA
ACCTCCTCAAAAGGGATTAGACATGTTTTTTTAATGTTTTATGCAAAGAAGATGACTCCC
AAGTCAGAGAATGGGGACTCGAAAGTAAGCCTTAAACTAGTGAAAGGGGCTTTTCCCTAG
ATCTTGACTTCTAGGCCTTGAACTTAGGGGCGTTCCTAGGTAGTCAAGTGTCTTTGTCCC
TTGGGAATTAGGTCATGACCCAGGAAAAAGTCAACCTATAGAAACCTGTAAGGATGGGCC
AAAATATGTGGTCTCAGAAGAACCACATCTAGTGAACTAGTTAAAAATTCTTGGTTTTAA
TTCCATTTGCTATCTTTTAGTAAAGTTTTCACCTTTAGTGTCCATTCCTAGGTTAGAGGA
GGACAGAGGAGATTGCAGTTTATGAGGTAGTCATAGCTCCCAAGGAGAACTTGGCCAAGC
TTCCATACATGGTAGATCGCTGCCCACCAGGGAAGATTGGTTGGCTAGTGTCTTAACGGC
CTTTGTATGTTTGCAGCCTTGGAGCTAAGTCTGCTCTGCCACCAATTAGCTATGTGAGCC
TTGCCAAGCTACTGAATTTTTTTTTTCTCTTTTCTCTTTTTTGGCTTTTTAGGGCCGCAC
CCACAGCCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACCTCTTATTTGAAAGGCAGTTTGTTTCATCTCTTCTTTTTCCAGGGTAGTCACTTG
TGTCTGGAAGAGGGACATAGCAGAGTCTATAATGGGAGTGGCCTTACAGAGGGATAGTCA
CACCAGAACAAGGGAAGGACAGCTATGGGGGCATCAAAAGTCCTGAAGTGAAGGGCCAGG
ATTAGGGGACAGTGCCTCACTGAAGTCTTGTTATAGAATCAGTGAGATGTTCACACTCAC
TACTGCAAGTGTCAGCCCCACTCCTACTCAATGGCTTCTGATTGGGAAGTGGAGTAGGTT
TCTATAAGGAAAATGACAGATACCTTCTCACCACACCCAGTGTAGTTAGACTATTGTATT
ATGATATGGTTGCCCTTCAGGCCACAGGGTAAGACCATACCACCATGGCTGGGTTTTGGA
ACCTCCTCAAAAGGGATTAGACATGTTTTTTTAATGTTTTATGCAAAGAAGATGACTCCC
AAGTCAGAGAATGGGGACTCGAAAGTAAGCCTTAAACTAGTGAAAGGGGCTTTTCCCTAG
ATCTTGACTTCTAGGCCTTGAACTTAGGGGCGTTCCTAGGTAGTCAAGTGTCTTTGTCCC
TTGGGAATTAGGTCATGACCCAGGAAAAAGTCAACCTATAGAAACCTGTAAGGATGGGCC
AAAATATGTGGTCTCAGAAGAACCACATCTAGTGAACTAGTTAAAAATTCTTGGTTTTAA
TTCCATTTGCTATCTTTTAGTAAAGTTTTCACCTTTAGTGTCCATTCCTAGGTTAGAGGA
GGACAGAGGAGATTGCAGTTTATGAGGTAGTCATAGCTCCCAAGGAGAACTTGGCCAAGC
TTCCATACATGGTAGATCGCTGCCCACCAGGGAAGATTGGTTGGCTAGTGTCTTAACGGC
CTTTGTATGTTTGCAGCCTTGGAGCTAAGTCTGCTCTGCCACCAATTAGCTATGTGAGCC
TTGCCAAGCTACTGAATTTTTTTTTTCTCTTTTCTCTTTTTTGGCTTTTTAGGGCCGCAC
CCACAGCCTATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.716151
               

               
               159-273, - strand, RNAz p=0.987875

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.716151
               

               
               159-273, - strand, RNAz p=0.987875

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-758, gnl|bosTau2|chr3 (73495306-73496069)
               

               
               1-758, gnl|Hg17|chr1 (39140815-39141574)
               


               
               826-979, gnl|bosTau2|chr3 (73496193-73496357)
               

               
               826-979, gnl|Hg17|chr1 (39141686-39142140)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-758, gnl|bosTau2|chr3 (73495306-73496069)
               

               
               1-758, gnl|Hg17|chr1 (39140815-39141574)
               


               
               826-979, gnl|bosTau2|chr3 (73496193-73496357)
               

               
               826-979, gnl|Hg17|chr1 (39141686-39142140)

	1-119, - strand, RNAz p=0.716151
	159-273, - strand, RNAz p=0.987875

	1-758, gnl\|bosTau2\|chr3 (73495306-73496069)
	1-758, gnl\|Hg17\|chr1 (39140815-39141574)

	826-979, gnl\|bosTau2\|chr3 (73496193-73496357)
	826-979, gnl\|Hg17\|chr1 (39141686-39142140)