Non-Coding RNA Search

Ss1.1-Pig4-TMW8002F22.5

Sequence:


               
               TCTAGCCATAGCTACAACCCTGCAGCCCACCGGACCCCTCAACATGGACCTCTGTACCAG
AGTGATGATGGCCCTCGTTCTGGACTGCAAGCCTCAGAGAGCTCCATCTACCAGCTGCCT
TTGACCCACAACCAAGGCTTTCCTGCAGCCTCCAGTCTCTTCCACAGCCAAGAAACGAGC
AGCAGCCCTGGCATGGGGGCCCACAGGGCAGCTCAGAGCTTCTCCCAGCCTGCCCGATCT
ACAGCCATCTCCTGCATTGGGGCCTATCGGCAGTACAAGCTATGCAACACGAATGTGTGT
CCAGAAAGCAGTAGAAGTATCTGGGAGGTACAGTGTGCGTCCTACAACAACAAGCCGTTC
ATGGGCCGGTTTTATGAATGGGAACCATTTGCAGAAGAACAGCTGCACTTGGGCTGCGGG
ATGTGTGTACTCCCTGAAGGGGACGCAAGCACGTCTTCCAAGCACTCACGGCTGTACGGT
TTCTTCCCAGATGCCCTCGACTGTGAGTCAAGGGCAATCGGAAATGTGAGCTGAATTGCC
AGGCCATGGGCTACCGCTTCTACGTCCGGCAAGCTGAGAAGGTCATTGATGGTACCCCCT
GTGACCAGAATGGCACCGCCATCTGCGTGTCTGGCGGGGGGAGATAGCATTGGCTGTGAT
GACTACCTAGGCTCCGACAAAGTCGTGGACAAATGCGGGGTGTGCGGAGGCGATAACACA
GGCTGTCATGTTGCGTCGGGTGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGA
GTTGTTGAGATTCCCCAAGGAGCCACAAAAATCAACATCACCGAGATGTACAAGATCAAC
AACTATTTGGCCTTGCGAATTCGTTCTGGCCGCTCCATCATCAACGGGAACTGGGCAATT
GACCGGCCTGGAAAATACGACGGCGGAGGGACCATGTTCACCTACAAGCGTACAAATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGCCATAGCTACAACCCTGCAGCCCACCGGACCCCTCAACATGGACCTCTGTACCAG
AGTGATGATGGCCCTCGTTCTGGACTGCAAGCCTCAGAGAGCTCCATCTACCAGCTGCCT
TTGACCCACAACCAAGGCTTTCCTGCAGCCTCCAGTCTCTTCCACAGCCAAGAAACGAGC
AGCAGCCCTGGCATGGGGGCCCACAGGGCAGCTCAGAGCTTCTCCCAGCCTGCCCGATCT
ACAGCCATCTCCTGCATTGGGGCCTATCGGCAGTACAAGCTATGCAACACGAATGTGTGT
CCAGAAAGCAGTAGAAGTATCTGGGAGGTACAGTGTGCGTCCTACAACAACAAGCCGTTC
ATGGGCCGGTTTTATGAATGGGAACCATTTGCAGAAGAACAGCTGCACTTGGGCTGCGGG
ATGTGTGTACTCCCTGAAGGGGACGCAAGCACGTCTTCCAAGCACTCACGGCTGTACGGT
TTCTTCCCAGATGCCCTCGACTGTGAGTCAAGGGCAATCGGAAATGTGAGCTGAATTGCC
AGGCCATGGGCTACCGCTTCTACGTCCGGCAAGCTGAGAAGGTCATTGATGGTACCCCCT
GTGACCAGAATGGCACCGCCATCTGCGTGTCTGGCGGGGGGAGATAGCATTGGCTGTGAT
GACTACCTAGGCTCCGACAAAGTCGTGGACAAATGCGGGGTGTGCGGAGGCGATAACACA
GGCTGTCATGTTGCGTCGGGTGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGA
GTTGTTGAGATTCCCCAAGGAGCCACAAAAATCAACATCACCGAGATGTACAAGATCAAC
AACTATTTGGCCTTGCGAATTCGTTCTGGCCGCTCCATCATCAACGGGAACTGGGCAATT
GACCGGCCTGGAAAATACGACGGCGGAGGGACCATGTTCACCTACAAGCGTACAAATGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61865311|ref|XP_614758.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61865311|ref|XP_614758.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.776211
               

               
               725-844, + strand, RNAz p=0.952141

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.776211
               

               
               725-844, + strand, RNAz p=0.952141

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC008840, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008840, +

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-303, gnl|bosTau2|chr10 (13167064-13167366)
               

               
               1-303, gnl|canFam2|chr30 (37901666-37902137)
               

               
               1-303, gnl|dasNov1|scaffold_123846 (1136-656)
               

               
               1-303, gnl|echTel1|scaffold_182004 (884-1351)
               

               
               1-303, gnl|galGal2|chr10 (7154987-7155449)
               

               
               1-303, gnl|hg17|chr15 (69322019-69322499)
               

               
               1-303, gnl|Hg17|chr15 (69322196-69322498)
               

               
               1-303, gnl|loxAfr1|scaffold_1048 (45926-46399)
               

               
               1-303, gnl|mm7|chr9 (60421498-60421018)
               

               
               1-303, gnl|Mm7|chr9 (60421319-60421017)
               

               
               1-303, gnl|monDom2|scaffold_12 (39324906-39324414)
               

               
               1-303, gnl|oryCun1|scaffold_87567 (2277-2760)
               

               
               1-303, gnl|panTro1|chr16_random (19554673-19555153)
               

               
               1-303, gnl|rheMac2|chr7 (49882969-49883449)
               

               
               1-303, gnl|rn3|chr8 (64334602-64334122)
               


               
               646-850, gnl|bosTau2|chr10 (11410366-11410162)
               

               
               646-850, gnl|Hg17|chr15 (69739923-69740127)
               

               
               646-850, gnl|Mm7|chr9 (60083982-60083778)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-303, gnl|bosTau2|chr10 (13167064-13167366)
               

               
               1-303, gnl|canFam2|chr30 (37901666-37902137)
               

               
               1-303, gnl|dasNov1|scaffold_123846 (1136-656)
               

               
               1-303, gnl|echTel1|scaffold_182004 (884-1351)
               

               
               1-303, gnl|galGal2|chr10 (7154987-7155449)
               

               
               1-303, gnl|hg17|chr15 (69322019-69322499)
               

               
               1-303, gnl|Hg17|chr15 (69322196-69322498)
               

               
               1-303, gnl|loxAfr1|scaffold_1048 (45926-46399)
               

               
               1-303, gnl|mm7|chr9 (60421498-60421018)
               

               
               1-303, gnl|Mm7|chr9 (60421319-60421017)
               

               
               1-303, gnl|monDom2|scaffold_12 (39324906-39324414)
               

               
               1-303, gnl|oryCun1|scaffold_87567 (2277-2760)
               

               
               1-303, gnl|panTro1|chr16_random (19554673-19555153)
               

               
               1-303, gnl|rheMac2|chr7 (49882969-49883449)
               

               
               1-303, gnl|rn3|chr8 (64334602-64334122)
               


               
               646-850, gnl|bosTau2|chr10 (11410366-11410162)
               

               
               646-850, gnl|Hg17|chr15 (69739923-69740127)
               

               
               646-850, gnl|Mm7|chr9 (60083982-60083778)

	120-239, - strand, RNAz p=0.776211
	725-844, + strand, RNAz p=0.952141

	1-303, gnl\|bosTau2\|chr10 (13167064-13167366)
	1-303, gnl\|canFam2\|chr30 (37901666-37902137)
	1-303, gnl\|dasNov1\|scaffold_123846 (1136-656)
	1-303, gnl\|echTel1\|scaffold_182004 (884-1351)
	1-303, gnl\|galGal2\|chr10 (7154987-7155449)
	1-303, gnl\|hg17\|chr15 (69322019-69322499)
	1-303, gnl\|Hg17\|chr15 (69322196-69322498)
	1-303, gnl\|loxAfr1\|scaffold_1048 (45926-46399)
	1-303, gnl\|mm7\|chr9 (60421498-60421018)
	1-303, gnl\|Mm7\|chr9 (60421319-60421017)
	1-303, gnl\|monDom2\|scaffold_12 (39324906-39324414)
	1-303, gnl\|oryCun1\|scaffold_87567 (2277-2760)
	1-303, gnl\|panTro1\|chr16_random (19554673-19555153)
	1-303, gnl\|rheMac2\|chr7 (49882969-49883449)
	1-303, gnl\|rn3\|chr8 (64334602-64334122)

	646-850, gnl\|bosTau2\|chr10 (11410366-11410162)
	646-850, gnl\|Hg17\|chr15 (69739923-69740127)
	646-850, gnl\|Mm7\|chr9 (60083982-60083778)