Non-Coding RNA Search

Ss1.1-Pig4-TMW8002F23.5

Sequence:


               
               GGCAGTAGATCCTTAAGAGTACCATAATACAGTGTATTTTCAAAACGGGAGTACATGGGT
AACTCAGCAGTGCTGCTTGACACACTGCACTCTCCTTGGCGGCCGTACCCACGTAAGTGC
ACAGCAGCCTAATCCACAGGCATAAAAGCAGGCCCGAGAAGCCTACACAGTATCCTCCAG
TGAAAACCAGAGAACAGTATTTTAAGATCTTGACATAAAATGGCTTTTCTAGGATTTTGC
TCTAGATGCTAGGAAACACAGCTTGTGTGAATTTTGAAAGGAATTAACTTATAGATGACA
TCATTTGGTATGTTCAAATATGGCAGGATTGATCCTTAAAAATCAGCATTTGCTTTGCTT
AGTTAAATGCAGCCATTTTTCGGCTAATACTTGCCTAACATGCCTGGCACTTTATTGAAA
TCCCTTATGAGCAGCTCAAAATGAGTCAGAAGGTCAATTTATGCCTTGGCCATGTTCCTT
TCACAACACGGGTTTTCCTGTGCTGCTGTTCAGGAGGAGCAATTAAGACTTTCTGTGTAT
TCAAAGCGGTCCAGCCGAACTCTGACCCCATCAAATGATATCATCAGAGCTCTGGCTATT
GCCTGGTGGTGCAGAGCTTTCATCTGTCAGTGAATCTTTGGGGGCCGCTATTTTCTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGTAGATCCTTAAGAGTACCATAATACAGTGTATTTTCAAAACGGGAGTACATGGGT
AACTCAGCAGTGCTGCTTGACACACTGCACTCTCCTTGGCGGCCGTACCCACGTAAGTGC
ACAGCAGCCTAATCCACAGGCATAAAAGCAGGCCCGAGAAGCCTACACAGTATCCTCCAG
TGAAAACCAGAGAACAGTATTTTAAGATCTTGACATAAAATGGCTTTTCTAGGATTTTGC
TCTAGATGCTAGGAAACACAGCTTGTGTGAATTTTGAAAGGAATTAACTTATAGATGACA
TCATTTGGTATGTTCAAATATGGCAGGATTGATCCTTAAAAATCAGCATTTGCTTTGCTT
AGTTAAATGCAGCCATTTTTCGGCTAATACTTGCCTAACATGCCTGGCACTTTATTGAAA
TCCCTTATGAGCAGCTCAAAATGAGTCAGAAGGTCAATTTATGCCTTGGCCATGTTCCTT
TCACAACACGGGTTTTCCTGTGCTGCTGTTCAGGAGGAGCAATTAAGACTTTCTGTGTAT
TCAAAGCGGTCCAGCCGAACTCTGACCCCATCAAATGATATCATCAGAGCTCTGGCTATT
GCCTGGTGGTGCAGAGCTTTCATCTGTCAGTGAATCTTTGGGGGCCGCTATTTTCTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-660, + strand, RNAz p=0.886812

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-660, + strand, RNAz p=0.886812

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               125-660, gnl|bosTau2|chr14 (39139434-39139967)
               

               
               125-660, gnl|Hg17|chr8 (100955247-100955756)
               

               
               125-660, gnl|Mm7|chr15 (36037618-36038134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-660, gnl|bosTau2|chr14 (39139434-39139967)
               

               
               125-660, gnl|Hg17|chr8 (100955247-100955756)
               

               
               125-660, gnl|Mm7|chr15 (36037618-36038134)

	125-660, gnl\|bosTau2\|chr14 (39139434-39139967)
	125-660, gnl\|Hg17\|chr8 (100955247-100955756)
	125-660, gnl\|Mm7\|chr15 (36037618-36038134)