Non-Coding RNA Search

Ss1.1-Pig4-TMW8002O12.3

Sequence:


               
               GGAGGAAATGGAAAAGGTAATCAGGAACAACACAAAACCCAGCCTTTGGATGCTAGAGCC
GAAAAAATCAAAGATAAGAAACCAAGGAAGAAAGCTATGGAAAGTTCTAGCAATAGTGAT
AGTGATTCGGGTACATCATCAGACACCTCAAGTGAAGGCATCAGTAGTAGTGATTCAGAC
GATCTAGAGGAAGATGAAGAAGAAGATCAAAGTATTGAAGAAAGTGAAGATGATGATTCT
GATTCAGAGAGTGAAGCACAACATAAAAGTAACAACCAGGTGCTATTACATGGTATTTCA
GACCCAAAAGCAGAGGGACAGAAAGCAACTGAAAAAGCCCAGGAAAAAAGAATACACCAG
CCATTACCTCTTGTGTNTGAACCCCAGACTCACTCATCATTCCAATCCCAGCAGAAGCAG
CCTCAGGTTTTGTCACAGCAGCTTCCATTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAA
TCTGTGAACAAACACACAAGTGTAATACAGTCTACGGGATTGGTGTCCAATGTGAAACCT
TTATCTTTAGTAAATCAAGCCAAAAAAGAGTCTTACATGAAACTCATAGTTCCTTCTCCT
GATGTACTTAAAGCAGGGAATAAAAATACCTCTGAAGAATCTAGTCCTTTGACCAGTGAA
TTGAGATCCAAACGGGAACAATATAAACAGACATTCCCAGCTCAGTTAAAGAAACAGGAG
TCATCTAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATCCAAAAGCAACCTNTAGT
TCACCAGCACATCCAAAACAAACATTAGAAAACAACCACCTTAATCCATTCTTGACAAAT
GCACTTTTAGGTAATCATCAACCAAATGGAGTTATTCAAAGTGTCATTCAAGAAGCTCCT
CTGGCACTTACTACCAAAACTAAAATGCAGACTAAGATTAATGAAAACATTGCCACTGCA
GGTGGCACCCCTTTTTCCTCACCTGTAAATCTTAGTACAAGTGGGAGAAGAACCCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAAATGGAAAAGGTAATCAGGAACAACACAAAACCCAGCCTTTGGATGCTAGAGCC
GAAAAAATCAAAGATAAGAAACCAAGGAAGAAAGCTATGGAAAGTTCTAGCAATAGTGAT
AGTGATTCGGGTACATCATCAGACACCTCAAGTGAAGGCATCAGTAGTAGTGATTCAGAC
GATCTAGAGGAAGATGAAGAAGAAGATCAAAGTATTGAAGAAAGTGAAGATGATGATTCT
GATTCAGAGAGTGAAGCACAACATAAAAGTAACAACCAGGTGCTATTACATGGTATTTCA
GACCCAAAAGCAGAGGGACAGAAAGCAACTGAAAAAGCCCAGGAAAAAAGAATACACCAG
CCATTACCTCTTGTGTNTGAACCCCAGACTCACTCATCATTCCAATCCCAGCAGAAGCAG
CCTCAGGTTTTGTCACAGCAGCTTCCATTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAA
TCTGTGAACAAACACACAAGTGTAATACAGTCTACGGGATTGGTGTCCAATGTGAAACCT
TTATCTTTAGTAAATCAAGCCAAAAAAGAGTCTTACATGAAACTCATAGTTCCTTCTCCT
GATGTACTTAAAGCAGGGAATAAAAATACCTCTGAAGAATCTAGTCCTTTGACCAGTGAA
TTGAGATCCAAACGGGAACAATATAAACAGACATTCCCAGCTCAGTTAAAGAAACAGGAG
TCATCTAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATCCAAAAGCAACCTNTAGT
TCACCAGCACATCCAAAACAAACATTAGAAAACAACCACCTTAATCCATTCTTGACAAAT
GCACTTTTAGGTAATCATCAACCAAATGGAGTTATTCAAAGTGTCATTCAAGAAGCTCCT
CTGGCACTTACTACCAAAACTAAAATGCAGACTAAGATTAATGAAAACATTGCCACTGCA
GGTGGCACCCCTTTTTCCTCACCTGTAAATCTTAGTACAAGTGGGAGAAGAACCCCCGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843525|ref|XP_613547.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843525|ref|XP_613547.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               476-595, - strand, RNAz p=0.908799

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-595, - strand, RNAz p=0.908799

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               277-676, gnl|bosTau2|chr23 (15097988-15098387)
               

               
               277-676, gnl|Hg17|chr2 (160120716-160120320)
               

               
               277-676, gnl|Mm7|chr2 (59899574-59899175)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-676, gnl|bosTau2|chr23 (15097988-15098387)
               

               
               277-676, gnl|Hg17|chr2 (160120716-160120320)
               

               
               277-676, gnl|Mm7|chr2 (59899574-59899175)

	277-676, gnl\|bosTau2\|chr23 (15097988-15098387)
	277-676, gnl\|Hg17\|chr2 (160120716-160120320)
	277-676, gnl\|Mm7\|chr2 (59899574-59899175)