Non-Coding RNA Search

Ss1.1-Pig4-TMW8002P04.5

Sequence:


               
               TTTGGGGGTTTGGATACTCTGAGAGCCAGAGCGTGGCAGAGGAAGGGTGTACAGTGAGGA
CATTTGAAATAAACTCGGCAGCCTTGGAGAAGAAGCAGCAGCAGGTCATCTGACTTAATC
CTCCTCTGGCACCAGGACTGGGAAGTCGGGTCTCCCGTGGACCTAGATCCTTGCTTTCTG
CCCGGTCCCCCGGGTGAGGGCCAGAGGTGGTCCTGGTAGCCAGGCGATAGGGTCCCAGAT
TCTATTGCTGTTCTTGGGGCTTGTGTGCTCGTCTGCCGCTTCTTGCACGTCTATTCACAC
GGGGGCTCTTGTTTACTCCCAGAAATGCCTCGAGGAGAAGAATGAAATCCTTCAGGGAAA
ACTCTCACAGCTGGAAGAACATTTGGCCCAGTTGCGGGAGAACCCACCCCGGGAGAAGGG
TGAGGTGCTGGGCGACATCTTGCAGGTAGGGTGAGGGGGTCTGTGTGCTGGGGTGCACGT
GGGGGTGTCTTTGTGCTGGGGTGCAGGCGGGGGCTCTGTGCTGGGGTGCATGTGGGGTGT
CTTTGTGCTGGGGTGCAGGTGGGGGCTCTTTGTGCTGGGGTGCATGTGGGGTGTCTTTGT
GCTGGGGTGCAGGTGGGGGCTCTTTGTGCTGGGGTGCATGTGGGGGTGTCTTTGTGCTGG
GGTGCAGGCGGGGGGCTGTGTGTGCTGAGGTGCATGTGGGGGCATCTTTGTGCTGGGGTG
CAGGCGGGGGCTCTGCTGGGGTGCTGTGGAGCCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGGGTTTGGATACTCTGAGAGCCAGAGCGTGGCAGAGGAAGGGTGTACAGTGAGGA
CATTTGAAATAAACTCGGCAGCCTTGGAGAAGAAGCAGCAGCAGGTCATCTGACTTAATC
CTCCTCTGGCACCAGGACTGGGAAGTCGGGTCTCCCGTGGACCTAGATCCTTGCTTTCTG
CCCGGTCCCCCGGGTGAGGGCCAGAGGTGGTCCTGGTAGCCAGGCGATAGGGTCCCAGAT
TCTATTGCTGTTCTTGGGGCTTGTGTGCTCGTCTGCCGCTTCTTGCACGTCTATTCACAC
GGGGGCTCTTGTTTACTCCCAGAAATGCCTCGAGGAGAAGAATGAAATCCTTCAGGGAAA
ACTCTCACAGCTGGAAGAACATTTGGCCCAGTTGCGGGAGAACCCACCCCGGGAGAAGGG
TGAGGTGCTGGGCGACATCTTGCAGGTAGGGTGAGGGGGTCTGTGTGCTGGGGTGCACGT
GGGGGTGTCTTTGTGCTGGGGTGCAGGCGGGGGCTCTGTGCTGGGGTGCATGTGGGGTGT
CTTTGTGCTGGGGTGCAGGTGGGGGCTCTTTGTGCTGGGGTGCATGTGGGGTGTCTTTGT
GCTGGGGTGCAGGTGGGGGCTCTTTGTGCTGGGGTGCATGTGGGGGTGTCTTTGTGCTGG
GGTGCAGGCGGGGGGCTGTGTGTGCTGAGGTGCATGTGGGGGCATCTTTGTGCTGGGGTG
CAGGCGGGGGCTCTGCTGGGGTGCTGTGGAGCCATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               318-451, + strand, RNAz p=0.979584

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-451, + strand, RNAz p=0.979584

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-451, gnl|bosTau2|chr15 (30019208-30019635)
               

               
               3-451, gnl|Hg17|chr11 (71405541-71405097)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-451, gnl|bosTau2|chr15 (30019208-30019635)
               

               
               3-451, gnl|Hg17|chr11 (71405541-71405097)

	3-451, gnl\|bosTau2\|chr15 (30019208-30019635)
	3-451, gnl\|Hg17\|chr11 (71405541-71405097)