Non-Coding RNA Search

Ss1.1-Pig4-TMW8003E13.3

Sequence:


               
               GCAGAGTTATGCCCACGAGGGCGTTCAGTACATCCAGGGACAACAGATTTTCACAGCCCA
CCCACAAGGAGTGGTGGTACAGCCAACTGCGGCCGTGACTACAATAGTTGCACCAGGGCA
GCCTCAGCCCTTACAGCCACCTGAAATGGTTGTGACAAATAATCTCCTGGATGGAGCACC
CCCATCTCCTCCCAAACCAAAAACCATCATCTTACCTCCCAACTGGAAGACTGCCCGAGA
CCCAGAAGGGAAGATTTACTACTACCATGTGATCACAAGGCAGACTCAGTGGGATCCTCC
TACTTGGGAAAGCCCAGGAGATGATGCCAGCCTTGAGCATGAAGCTGAGATGGACTTAGG
AACCCCAACATATGATGAGAATCCCATGAAGACCTCAAAAAAGCCCAAGACAGCAGAAGC
AGCTGCCGCCGCAGCCGCCTCCGAAGATGGGGGATTTCTACGACCCCGAGCACCCGACCC
CTGAAAGAAGAAAATGAGGCAAAGATTGAAAATGTACAGAAAACAGGTTTCATCAAAGGA
CCAATATTCAAAGGTGTTGCTTCTAGTCGTTTTTTGCCCAAAGGCACCAAGACAAAAGTT
AATTTGGAGGAACAGGGACGACAGAAGGTGTCATTCAGCTTCAGCCTTACAAAGAAAACT
TTGCAGAACAGGTTTCTGACTGCACTTGGCAATGAGAAGCAAAATGATATGCCTAACTCA
CCAGCTGTACCTCTTCAAGTAGACTCGACCCCTAAAATTAAAACAGACATTGGAGATACA
TTATCTACTACAGAAGAATCTTCCCCACCAAAATCAAGGGTAGAATTGGGCAAAATTCAT
TTTAAGAAACATCTGCTTCATGTAACATCCAGGCCACTGCTGACTACTACCACAGCAGTG
ACATCTCCACCTCCTCCCATACTACCATTACCAGCAGTCGTAGCAGAATCAACAACTGTA
GACTCACCACCCTCATCTCCACCTCCACCACCTCCACCTCCCCAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGTTATGCCCACGAGGGCGTTCAGTACATCCAGGGACAACAGATTTTCACAGCCCA
CCCACAAGGAGTGGTGGTACAGCCAACTGCGGCCGTGACTACAATAGTTGCACCAGGGCA
GCCTCAGCCCTTACAGCCACCTGAAATGGTTGTGACAAATAATCTCCTGGATGGAGCACC
CCCATCTCCTCCCAAACCAAAAACCATCATCTTACCTCCCAACTGGAAGACTGCCCGAGA
CCCAGAAGGGAAGATTTACTACTACCATGTGATCACAAGGCAGACTCAGTGGGATCCTCC
TACTTGGGAAAGCCCAGGAGATGATGCCAGCCTTGAGCATGAAGCTGAGATGGACTTAGG
AACCCCAACATATGATGAGAATCCCATGAAGACCTCAAAAAAGCCCAAGACAGCAGAAGC
AGCTGCCGCCGCAGCCGCCTCCGAAGATGGGGGATTTCTACGACCCCGAGCACCCGACCC
CTGAAAGAAGAAAATGAGGCAAAGATTGAAAATGTACAGAAAACAGGTTTCATCAAAGGA
CCAATATTCAAAGGTGTTGCTTCTAGTCGTTTTTTGCCCAAAGGCACCAAGACAAAAGTT
AATTTGGAGGAACAGGGACGACAGAAGGTGTCATTCAGCTTCAGCCTTACAAAGAAAACT
TTGCAGAACAGGTTTCTGACTGCACTTGGCAATGAGAAGCAAAATGATATGCCTAACTCA
CCAGCTGTACCTCTTCAAGTAGACTCGACCCCTAAAATTAAAACAGACATTGGAGATACA
TTATCTACTACAGAAGAATCTTCCCCACCAAAATCAAGGGTAGAATTGGGCAAAATTCAT
TTTAAGAAACATCTGCTTCATGTAACATCCAGGCCACTGCTGACTACTACCACAGCAGTG
ACATCTCCACCTCCTCCCATACTACCATTACCAGCAGTCGTAGCAGAATCAACAACTGTA
GACTCACCACCCTCATCTCCACCTCCACCACCTCCACCTCCCCAAGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|3329423|gb|AAC26846.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|3329423|gb|AAC26846.1|

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               3-139, gnl|bosTau2|chr22 (41089077-41088941)
               

               
               3-139, gnl|Hg17|chr3 (47063117-47062981)
               

               
               3-139, gnl|Mm7|chr9 (110296819-110296955)
               


               
               140-280, gnl|bosTau2|chr22 (41087886-41087746)
               

               
               140-280, gnl|canFam2|chr20 (44777750-44777610)
               

               
               140-280, gnl|danRer3|chr16 (9179547-9179425)
               

               
               140-280, gnl|dasNov1|scaffold_4418 (16366-16500)
               

               
               140-280, gnl|fr1|chrUn (65647685-65647564)
               

               
               140-280, gnl|galGal2|chr2 (3392433-3392559)
               

               
               140-280, gnl|hg17|chr3 (47059034-47059175)
               

               
               140-280, gnl|Hg17|chr3 (47059194-47059054)
               

               
               140-280, gnl|loxAfr1|scaffold_3205 (74529-74388)
               

               
               140-280, gnl|mm7|chr9 (110299985-110299846)
               

               
               140-280, gnl|Mm7|chr9 (110299825-110299965)
               

               
               140-280, gnl|monDom2|scaffold_5 (81455035-81455171)
               

               
               140-280, gnl|oryCun1|scaffold_179327 (1628-1487)
               

               
               140-280, gnl|panTro1|chr2 (48517247-48517388)
               

               
               140-280, gnl|rheMac2|chr2 (89502861-89502720)
               

               
               140-280, gnl|rn3|chr8 (115002713-115002574)
               

               
               140-280, gnl|tetNig1|chr8 (6880252-6880373)
               

               
               140-280, gnl|xenTro1|scaffold_298 (191857-191997)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-139, gnl|bosTau2|chr22 (41089077-41088941)
               

               
               3-139, gnl|Hg17|chr3 (47063117-47062981)
               

               
               3-139, gnl|Mm7|chr9 (110296819-110296955)
               


               
               140-280, gnl|bosTau2|chr22 (41087886-41087746)
               

               
               140-280, gnl|canFam2|chr20 (44777750-44777610)
               

               
               140-280, gnl|danRer3|chr16 (9179547-9179425)
               

               
               140-280, gnl|dasNov1|scaffold_4418 (16366-16500)
               

               
               140-280, gnl|fr1|chrUn (65647685-65647564)
               

               
               140-280, gnl|galGal2|chr2 (3392433-3392559)
               

               
               140-280, gnl|hg17|chr3 (47059034-47059175)
               

               
               140-280, gnl|Hg17|chr3 (47059194-47059054)
               

               
               140-280, gnl|loxAfr1|scaffold_3205 (74529-74388)
               

               
               140-280, gnl|mm7|chr9 (110299985-110299846)
               

               
               140-280, gnl|Mm7|chr9 (110299825-110299965)
               

               
               140-280, gnl|monDom2|scaffold_5 (81455035-81455171)
               

               
               140-280, gnl|oryCun1|scaffold_179327 (1628-1487)
               

               
               140-280, gnl|panTro1|chr2 (48517247-48517388)
               

               
               140-280, gnl|rheMac2|chr2 (89502861-89502720)
               

               
               140-280, gnl|rn3|chr8 (115002713-115002574)
               

               
               140-280, gnl|tetNig1|chr8 (6880252-6880373)
               

               
               140-280, gnl|xenTro1|scaffold_298 (191857-191997)

	3-139, gnl\|bosTau2\|chr22 (41089077-41088941)
	3-139, gnl\|Hg17\|chr3 (47063117-47062981)
	3-139, gnl\|Mm7\|chr9 (110296819-110296955)

	140-280, gnl\|bosTau2\|chr22 (41087886-41087746)
	140-280, gnl\|canFam2\|chr20 (44777750-44777610)
	140-280, gnl\|danRer3\|chr16 (9179547-9179425)
	140-280, gnl\|dasNov1\|scaffold_4418 (16366-16500)
	140-280, gnl\|fr1\|chrUn (65647685-65647564)
	140-280, gnl\|galGal2\|chr2 (3392433-3392559)
	140-280, gnl\|hg17\|chr3 (47059034-47059175)
	140-280, gnl\|Hg17\|chr3 (47059194-47059054)
	140-280, gnl\|loxAfr1\|scaffold_3205 (74529-74388)
	140-280, gnl\|mm7\|chr9 (110299985-110299846)
	140-280, gnl\|Mm7\|chr9 (110299825-110299965)
	140-280, gnl\|monDom2\|scaffold_5 (81455035-81455171)
	140-280, gnl\|oryCun1\|scaffold_179327 (1628-1487)
	140-280, gnl\|panTro1\|chr2 (48517247-48517388)
	140-280, gnl\|rheMac2\|chr2 (89502861-89502720)
	140-280, gnl\|rn3\|chr8 (115002713-115002574)
	140-280, gnl\|tetNig1\|chr8 (6880252-6880373)
	140-280, gnl\|xenTro1\|scaffold_298 (191857-191997)