Non-Coding RNA Search

Ss1.1-Pig4-TMW8003E18.3

Sequence:


               
               GATAATCTCTAGGTCCATCCATGTTGCTGTCATCATAGTTTTTTAAAAGTGATATAGAGA
TGGCTAGGCCAAGACAGAGTCAGGGATCTGGAGAGGGGGATGGAGAGAGAAAAGATAGAG
GAGTCAGGACAAATTGCAACCCATTACAAGAAATTTATTAGTACTGTTCAGTCAGCAGGC
TGCCAGCTAAATTTAATATAGATCTATATACAAAGAAAATGCCTCTTTCTACATAATGAA
TATTTAATCATGCATGGGTCAGGCAATTTCACTGAAGTAATTAAAAGCAGCCTTTTGTTT
ATTGCTCAAAAATGATAGTGACCCACTGACCGGAGCTGCAGATACAGTGACATATTGAAA
ACATTACCTACTGACATACGTTATTAAAGAGGAATTAAGGGTCGCTTTCTTCCCCTCCCC
TTAAAAGCTAATCATTCCTGAGCCTCCTGTCTTTTCCCATGCAGAGGATGGCTGCAAGGG
GAGGCTGCCTCCCAGATGAAGCTGGAGAACCAGGCAGGCCCCCTCCATCTATGTCTTTCC
CCAGGACCATAAATTGAAACAGATGAGATAGTTATTGAGAAGACTACAGAGAGGAAATTG
GCCACAATGTGTATTTTCTGTGGAAAGGTCTCCCCACGGTCCTGCCATATCCAGCCAGTT
GCAAAATCCTGTCAATTCTATTCCAGGGACCCTTGTCACAGTGCCCTGTTCCCTTTGTCA
CTATCACTGCCCTGCTTCAGCACCCCGCAGTGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAATCTCTAGGTCCATCCATGTTGCTGTCATCATAGTTTTTTAAAAGTGATATAGAGA
TGGCTAGGCCAAGACAGAGTCAGGGATCTGGAGAGGGGGATGGAGAGAGAAAAGATAGAG
GAGTCAGGACAAATTGCAACCCATTACAAGAAATTTATTAGTACTGTTCAGTCAGCAGGC
TGCCAGCTAAATTTAATATAGATCTATATACAAAGAAAATGCCTCTTTCTACATAATGAA
TATTTAATCATGCATGGGTCAGGCAATTTCACTGAAGTAATTAAAAGCAGCCTTTTGTTT
ATTGCTCAAAAATGATAGTGACCCACTGACCGGAGCTGCAGATACAGTGACATATTGAAA
ACATTACCTACTGACATACGTTATTAAAGAGGAATTAAGGGTCGCTTTCTTCCCCTCCCC
TTAAAAGCTAATCATTCCTGAGCCTCCTGTCTTTTCCCATGCAGAGGATGGCTGCAAGGG
GAGGCTGCCTCCCAGATGAAGCTGGAGAACCAGGCAGGCCCCCTCCATCTATGTCTTTCC
CCAGGACCATAAATTGAAACAGATGAGATAGTTATTGAGAAGACTACAGAGAGGAAATTG
GCCACAATGTGTATTTTCTGTGGAAAGGTCTCCCCACGGTCCTGCCATATCCAGCCAGTT
GCAAAATCCTGTCAATTCTATTCCAGGGACCCTTGTCACAGTGCCCTGTTCCCTTTGTCA
CTATCACTGCCCTGCTTCAGCACCCCGCAGTGCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               458-573, - strand, RNAz p=0.741647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               458-573, - strand, RNAz p=0.741647

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               517-606, - strand, RNAmicro p=0.985581

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               517-606, - strand, RNAmicro p=0.985581

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-676, gnl|bosTau2|chr9 (22471029-22470388)
               

               
               30-676, gnl|Hg17|chr15 (67594227-67593197)
               

               
               30-676, gnl|Mm7|chr9 (61907909-61908473)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-676, gnl|bosTau2|chr9 (22471029-22470388)
               

               
               30-676, gnl|Hg17|chr15 (67594227-67593197)
               

               
               30-676, gnl|Mm7|chr9 (61907909-61908473)

	30-676, gnl\|bosTau2\|chr9 (22471029-22470388)
	30-676, gnl\|Hg17\|chr15 (67594227-67593197)
	30-676, gnl\|Mm7\|chr9 (61907909-61908473)