Non-Coding RNA Search

Ss1.1-Pig4-TMW8003H04.5

Sequence:


               
               GCACACAGGTTCCAGGAATACTTTTTTTTTTTTTCTTCATCTAAGTGATTCTTTGTGGAT
GGGAAAAGATTTGAGTCCTAATGCTTACCCTGTTTTAAAGCTATTTCTCTGTAGTCTGAA
CTGCTTAATAAATTGGGCCACTTACCAATGAGCCACACAACCAGTTCTTGTCAGGAGCTG
GTTGAAAACTGTGCCGTGCATGTAGCAGGGATGGCACAAGAAGAAAGCCGCCGTGGTCAA
GTACCATCTACCTTTTATCATGGTGCCAACCAAGAACTTGACCTGTCCACCAAAGTGTAC
AAAAGGGAATCAGGAAGTCCTTATTCTGTGTTAGTGGACACCAAGATGAGCAAACCCCAT
CTCCATGAAACAGAGGAACAGCCATTTTTCAGGGAGACAAGAGCAGTGTCTGACGTGCAT
GCGGTTAAAGAAGACCGGGAGAATTCTGATGACACAGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAAGTCTCTTACAAAAGGGAGCAGATCATAGTGGAGGTAAACCTTAATAATCAAACA
TTAAATGTGTCTAAAGGGGAAAAGGGTGTCTCTTCTCAGTCCAAAGAGACGCCTGTTCTT
AAGACAAGCAGTGAGGAAGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACAGGTTCCAGGAATACTTTTTTTTTTTTTCTTCATCTAAGTGATTCTTTGTGGAT
GGGAAAAGATTTGAGTCCTAATGCTTACCCTGTTTTAAAGCTATTTCTCTGTAGTCTGAA
CTGCTTAATAAATTGGGCCACTTACCAATGAGCCACACAACCAGTTCTTGTCAGGAGCTG
GTTGAAAACTGTGCCGTGCATGTAGCAGGGATGGCACAAGAAGAAAGCCGCCGTGGTCAA
GTACCATCTACCTTTTATCATGGTGCCAACCAAGAACTTGACCTGTCCACCAAAGTGTAC
AAAAGGGAATCAGGAAGTCCTTATTCTGTGTTAGTGGACACCAAGATGAGCAAACCCCAT
CTCCATGAAACAGAGGAACAGCCATTTTTCAGGGAGACAAGAGCAGTGTCTGACGTGCAT
GCGGTTAAAGAAGACCGGGAGAATTCTGATGACACAGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAAGTCTCTTACAAAAGGGAGCAGATCATAGTGGAGGTAAACCTTAATAATCAAACA
TTAAATGTGTCTAAAGGGGAAAAGGGTGTCTCTTCTCAGTCCAAAGAGACGCCTGTTCTT
AAGACAAGCAGTGAGGAAGAAGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-399, - strand, RNAz p=0.986832
               

               
               440-624, + strand, RNAz p=0.839472

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-399, - strand, RNAz p=0.986832
               

               
               440-624, + strand, RNAz p=0.839472

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               246-358, - strand, RNAmicro p=0.970994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               246-358, - strand, RNAmicro p=0.970994

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014897, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014897, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr19 (30060774-30061386)
               

               
               1-624, gnl|Hg17|chr17 (44750225-44749622)
               

               
               1-624, gnl|Mm7|chr11 (95858160-95858751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr19 (30060774-30061386)
               

               
               1-624, gnl|Hg17|chr17 (44750225-44749622)
               

               
               1-624, gnl|Mm7|chr11 (95858160-95858751)

	120-399, - strand, RNAz p=0.986832
	440-624, + strand, RNAz p=0.839472

	1-624, gnl\|bosTau2\|chr19 (30060774-30061386)
	1-624, gnl\|Hg17\|chr17 (44750225-44749622)
	1-624, gnl\|Mm7\|chr11 (95858160-95858751)