Non-Coding RNA Search

Ss1.1-Pig4-TMW8003I02.3

Sequence:


               
               GTAAATTTAGTGCATCTGCATATTTATACTCTTTAAATAGACCAATGTAAACAGTTTCTT
ATCTGCCATATGTTGAAATGTTTTAGTAAAGACGTAACTGCCTAGTCAACAAAGAATGGC
ATTGAATTGCACTGTTTTGGAAAAAAAGTTAAGTGAACTAGATGCCTGTTAATCTGGTTC
TTTAAATATCATAAACAAAAGTATCAGAATGTGTTTCCAAGGACAAAGGCGGAGTTTTCT
GGGCTTTGATTGGTCACTGCCTTGTCCTGTCCCACAGCCATCCTTAATTGGCTTTGGGTA
GATTGGAATCACATAAGCAGAGTGACATTTATTACTTTACTAGTAGTCTCTTCGCACTGA
GCCCCGAGATTCCCAAGGACTAACTGTAAAAGATTTCTTTCATTTCGTCCATGATCTCCG
AGAGGGGATCATTCTAAGAGCAGGCATGAGTTTGAGTGCAAGAAGAGTCACTCTGCCTGC
AATAACGCCAATAGTTCTACAGAAAAGGGTATGTGACTTTTGCTTTTTTTTTCTTTTTCT
TGCTGTTTTTTTCCTTCCTGTTACTGTGTTTATTAATGTGTTAGAAATTTTCATTACATA
TTCTGAGAGAGACTAATTCATTGAGGCTATAGGTGATTAAAGGATAGATTATTGAAATTA
GACTAGGGAGAAAAAAAAGCTGGGCTAGAACATCCCTGTAGTAAAAAAAGCTCCATGTGA
AAGCAGTCTGGTCTCAATTTCAGGGCATTGTGATTTAGAGACTGTATTGAAGCCTTTTCT
TTCTGTTTTTCCTTCTACTGTAACTTCAGGCCTCTTTGCCTTTAGTTCAATAGGCAATCT
GCTAGCTATTATGTTTTACATTTGTTTACTAAGGAGCTGTTTCTTTGTTTCACTATAATT
CATAATGGCATCCATCTTCATTGTTGAATGGACTATATAATTGTCTTACTAGCTTAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAATTTAGTGCATCTGCATATTTATACTCTTTAAATAGACCAATGTAAACAGTTTCTT
ATCTGCCATATGTTGAAATGTTTTAGTAAAGACGTAACTGCCTAGTCAACAAAGAATGGC
ATTGAATTGCACTGTTTTGGAAAAAAAGTTAAGTGAACTAGATGCCTGTTAATCTGGTTC
TTTAAATATCATAAACAAAAGTATCAGAATGTGTTTCCAAGGACAAAGGCGGAGTTTTCT
GGGCTTTGATTGGTCACTGCCTTGTCCTGTCCCACAGCCATCCTTAATTGGCTTTGGGTA
GATTGGAATCACATAAGCAGAGTGACATTTATTACTTTACTAGTAGTCTCTTCGCACTGA
GCCCCGAGATTCCCAAGGACTAACTGTAAAAGATTTCTTTCATTTCGTCCATGATCTCCG
AGAGGGGATCATTCTAAGAGCAGGCATGAGTTTGAGTGCAAGAAGAGTCACTCTGCCTGC
AATAACGCCAATAGTTCTACAGAAAAGGGTATGTGACTTTTGCTTTTTTTTTCTTTTTCT
TGCTGTTTTTTTCCTTCCTGTTACTGTGTTTATTAATGTGTTAGAAATTTTCATTACATA
TTCTGAGAGAGACTAATTCATTGAGGCTATAGGTGATTAAAGGATAGATTATTGAAATTA
GACTAGGGAGAAAAAAAAGCTGGGCTAGAACATCCCTGTAGTAAAAAAAGCTCCATGTGA
AAGCAGTCTGGTCTCAATTTCAGGGCATTGTGATTTAGAGACTGTATTGAAGCCTTTTCT
TTCTGTTTTTCCTTCTACTGTAACTTCAGGCCTCTTTGCCTTTAGTTCAATAGGCAATCT
GCTAGCTATTATGTTTTACATTTGTTTACTAAGGAGCTGTTTCTTTGTTTCACTATAATT
CATAATGGCATCCATCTTCATTGTTGAATGGACTATATAATTGTCTTACTAGCTTAAAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               98-375, - strand, RNAz p=0.949804
               

               
               754-911, + strand, RNAz p=0.843417

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-375, - strand, RNAz p=0.949804
               

               
               754-911, + strand, RNAz p=0.843417

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-958, gnl|bosTau2|chr2 (24314164-24313196)
               

               
               1-958, gnl|Hg17|chr2 (165250841-165249879)
               

               
               1-958, gnl|Mm7|chr2 (64906633-64905662)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-958, gnl|bosTau2|chr2 (24314164-24313196)
               

               
               1-958, gnl|Hg17|chr2 (165250841-165249879)
               

               
               1-958, gnl|Mm7|chr2 (64906633-64905662)

	98-375, - strand, RNAz p=0.949804
	754-911, + strand, RNAz p=0.843417

	1-958, gnl\|bosTau2\|chr2 (24314164-24313196)
	1-958, gnl\|Hg17\|chr2 (165250841-165249879)
	1-958, gnl\|Mm7\|chr2 (64906633-64905662)