Non-Coding RNA Search

Ss1.1-Pig4-TMW8003M21.5

Sequence:


               
               CAGGCTCTTCCAAACATGAAGCAGATGAGAGGAGACTGCTTGACTCAAAGTAACATTTTG
CATCATGTAACAATGATGGGAAATTTTACTTGTTGAAAATTGCTTCATCTCAACAGTTGT
ATTTCAATACCACTACTAATTAAAAGTATATTTGCAATGTAATATAACTAAACAATTTTT
TTGGTAATATATAAATTAACGAACTCTTTGAAGCCAGGTCTAATGAAGGGTATCAGAGAC
ACAGAGACACCCCAAATCTCTTTTAATATTTAGTGTTGAGTGAGCTCAGGGATGAACATT
TATGCTCACAAATACTCTATTTTAATGCAAACTAAGTATGTGCACACATATCGATATATA
CAGACTCAGACACTCTTTCACATCTCACATATACACATATCACACACTCATGTCACACAC
ACACTCATATCACACATCAGGTAGCTTGAATCATGCCAAGTAGCCAGTACAGATAATCCA
TTTGTAGGTAATTAAGAATCCACTTCAACTGAAAAATATTTGATTTTCAAAGTATAAAGA
GGTTTTTAATATCTCCATTTTTTTTTTAGTTAAAATAACCCTAGGAATTACTTATCATGC
TTTGAGATTTAAGTATTAGTATTTGTAAATCTTTCATGTATGCTTTGTTTGTAGGAGATG
TGATAATTATTAAAAATCTGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTCTTCCAAACATGAAGCAGATGAGAGGAGACTGCTTGACTCAAAGTAACATTTTG
CATCATGTAACAATGATGGGAAATTTTACTTGTTGAAAATTGCTTCATCTCAACAGTTGT
ATTTCAATACCACTACTAATTAAAAGTATATTTGCAATGTAATATAACTAAACAATTTTT
TTGGTAATATATAAATTAACGAACTCTTTGAAGCCAGGTCTAATGAAGGGTATCAGAGAC
ACAGAGACACCCCAAATCTCTTTTAATATTTAGTGTTGAGTGAGCTCAGGGATGAACATT
TATGCTCACAAATACTCTATTTTAATGCAAACTAAGTATGTGCACACATATCGATATATA
CAGACTCAGACACTCTTTCACATCTCACATATACACATATCACACACTCATGTCACACAC
ACACTCATATCACACATCAGGTAGCTTGAATCATGCCAAGTAGCCAGTACAGATAATCCA
TTTGTAGGTAATTAAGAATCCACTTCAACTGAAAAATATTTGATTTTCAAAGTATAAAGA
GGTTTTTAATATCTCCATTTTTTTTTTAGTTAAAATAACCCTAGGAATTACTTATCATGC
TTTGAGATTTAAGTATTAGTATTTGTAAATCTTTCATGTATGCTTTGTTTGTAGGAGATG
TGATAATTATTAAAAATCTGTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-159, + strand, RNAz p=0.982867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-159, + strand, RNAz p=0.982867

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               22-119, + strand, RNAmicro p=0.999707

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               22-119, + strand, RNAmicro p=0.999707

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-676, gnl|bosTau2|chr2 (47483622-47484263)
               

               
               2-676, gnl|Hg17|chr2 (216057999-216057374)
               

               
               2-676, gnl|Mm7|chr1 (71834816-71833904)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-676, gnl|bosTau2|chr2 (47483622-47484263)
               

               
               2-676, gnl|Hg17|chr2 (216057999-216057374)
               

               
               2-676, gnl|Mm7|chr1 (71834816-71833904)

	2-676, gnl\|bosTau2\|chr2 (47483622-47484263)
	2-676, gnl\|Hg17\|chr2 (216057999-216057374)
	2-676, gnl\|Mm7\|chr1 (71834816-71833904)