Non-Coding RNA Search

Ss1.1-Pig4-TMW8003O18.5

Sequence:


               
               GCGGCTCGAGCCAGAGAGAGGGAGAAAGAGCGCGACCGCCAGAGGGACTGGGAAGACAAA
GACAAAGGCCGAGAGGAGCGCAGAGAGAAGCGGGACGATGCCCGAGAAGACAGGAACCCC
AGGGATGGACACGAGGAGAGAAAGTCCAAGAAGCGCTATAGAAACGAAGGCAGTCCTAGC
CGTCGTCAGTCACCTAAGCGCCGGCGAGAACATTCTCCTGACAGTGACACCTACAACAGC
GGAGATGATAAGAATGAAAAACACAGACTCTTGAGTCAGGTTGTTCGACCTCAAGAATCT
CGTTCTCTGAGCCCGTCTCACCTTACAGAGGACAGGCAGAGTCGATGGAAAGAGGAGGAT
CGAAAACCGGAGAGAAAAGAAAGTTCAAGGCGCTACGACGAGCAGGAGTTCAAAGAGAGA
GTTTCTTCTGTAGATAAGCAGAGAGAACAGATCGAAATCACAGAGAGCTCAAGGACTCGG
GCCCAAGATGTGCTAGGACACCACCTGTCTGAAGACCGAGACATGTCTGATCGAGCTCAT
GATGAAAACAAGAAAAAAGCCAAAATTCAGAAGAAACCTCTTAAGAAAAAGAAAGAGGAT
GATGTTGGAATAGACAGGGGTACCACAGAGACAGTGTCGGAGGATAGTCAAGTCTTTTCA
CCGAGAAAAGGCCAGAAGAAGAAAAGCATTGAAAAAAAGCGTAAAAGGTCCAAAGGCGAT
TCTGACCTTTCTGATGAAGAGGCAGTCCAGCAGAGTAAGAGGAGGAGAGGCCCTCGGACC
CCCCCTATAACCTCCAAGGAGGAACTGGTGGAAATTTCCAATGATAGGGATGGCACTCTG
GAGGATGCTCAGAAGAAAGAAGATACAGCGTTCAGTGACTGGTCTGATGAGGATGTGCCT
GACCGGGCCGAGGGGGCGGAACCAGAGCACGGGGCCACAGCTGCCACTCCTGCAAGGACG
CCTTCCCCATCGTCTCTCCCTCCTCCGCCCCCTCCTCTGGCTGCTACAACCCCAGCTGCT
GGTGCTGCCACCACCATGTCCACCTCGGCCGCGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCCAGAGAGAGGGAGAAAGAGCGCGACCGCCAGAGGGACTGGGAAGACAAA
GACAAAGGCCGAGAGGAGCGCAGAGAGAAGCGGGACGATGCCCGAGAAGACAGGAACCCC
AGGGATGGACACGAGGAGAGAAAGTCCAAGAAGCGCTATAGAAACGAAGGCAGTCCTAGC
CGTCGTCAGTCACCTAAGCGCCGGCGAGAACATTCTCCTGACAGTGACACCTACAACAGC
GGAGATGATAAGAATGAAAAACACAGACTCTTGAGTCAGGTTGTTCGACCTCAAGAATCT
CGTTCTCTGAGCCCGTCTCACCTTACAGAGGACAGGCAGAGTCGATGGAAAGAGGAGGAT
CGAAAACCGGAGAGAAAAGAAAGTTCAAGGCGCTACGACGAGCAGGAGTTCAAAGAGAGA
GTTTCTTCTGTAGATAAGCAGAGAGAACAGATCGAAATCACAGAGAGCTCAAGGACTCGG
GCCCAAGATGTGCTAGGACACCACCTGTCTGAAGACCGAGACATGTCTGATCGAGCTCAT
GATGAAAACAAGAAAAAAGCCAAAATTCAGAAGAAACCTCTTAAGAAAAAGAAAGAGGAT
GATGTTGGAATAGACAGGGGTACCACAGAGACAGTGTCGGAGGATAGTCAAGTCTTTTCA
CCGAGAAAAGGCCAGAAGAAGAAAAGCATTGAAAAAAAGCGTAAAAGGTCCAAAGGCGAT
TCTGACCTTTCTGATGAAGAGGCAGTCCAGCAGAGTAAGAGGAGGAGAGGCCCTCGGACC
CCCCCTATAACCTCCAAGGAGGAACTGGTGGAAATTTCCAATGATAGGGATGGCACTCTG
GAGGATGCTCAGAAGAAAGAAGATACAGCGTTCAGTGACTGGTCTGATGAGGATGTGCCT
GACCGGGCCGAGGGGGCGGAACCAGAGCACGGGGCCACAGCTGCCACTCCTGCAAGGACG
CCTTCCCCATCGTCTCTCCCTCCTCCGCCCCCTCCTCTGGCTGCTACAACCCCAGCTGCT
GGTGCTGCCACCACCATGTCCACCTCGGCCGCGACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CT50_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CT50_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-372, - strand, RNAz p=0.570176

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-372, - strand, RNAz p=0.570176

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               8-150, gnl|bosTau2|chr12 (6518027-6517885)
               

               
               8-150, gnl|canFam2|chr22 (8137581-8137474)
               

               
               8-150, gnl|danRer3|chr1 (32097034-32096946)
               

               
               8-150, gnl|dasNov1|scaffold_18339 (5640-5751)
               

               
               8-150, gnl|echTel1|scaffold_284042 (31137-31033)
               

               
               8-150, gnl|galGal2|chr1 (160124927-160125024)
               

               
               8-150, gnl|hg17|chr13 (45447396-45447505)
               

               
               8-150, gnl|Hg17|chr13 (45447560-45447418)
               

               
               8-150, gnl|mm7|chr14 (70008722-70008624)
               

               
               8-150, gnl|Mm7|chr14 (70008567-70008715)
               

               
               8-150, gnl|monDom2|scaffold_64 (8700351-8700446)
               

               
               8-150, gnl|panTro1|chr14 (45163644-45163753)
               

               
               8-150, gnl|rheMac2|chr17 (24849329-24849436)
               

               
               8-150, gnl|rn3|chr15 (56219527-56219429)
               

               
               8-150, gnl|xenTro1|scaffold_809 (42696-42597)
               


               
               254-1044, gnl|bosTau2|chr12 (6511403-6510613)
               

               
               254-1044, gnl|Hg17|chr13 (45442107-45441278)
               

               
               254-1044, gnl|Mm7|chr14 (70010639-70011438)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-150, gnl|bosTau2|chr12 (6518027-6517885)
               

               
               8-150, gnl|canFam2|chr22 (8137581-8137474)
               

               
               8-150, gnl|danRer3|chr1 (32097034-32096946)
               

               
               8-150, gnl|dasNov1|scaffold_18339 (5640-5751)
               

               
               8-150, gnl|echTel1|scaffold_284042 (31137-31033)
               

               
               8-150, gnl|galGal2|chr1 (160124927-160125024)
               

               
               8-150, gnl|hg17|chr13 (45447396-45447505)
               

               
               8-150, gnl|Hg17|chr13 (45447560-45447418)
               

               
               8-150, gnl|mm7|chr14 (70008722-70008624)
               

               
               8-150, gnl|Mm7|chr14 (70008567-70008715)
               

               
               8-150, gnl|monDom2|scaffold_64 (8700351-8700446)
               

               
               8-150, gnl|panTro1|chr14 (45163644-45163753)
               

               
               8-150, gnl|rheMac2|chr17 (24849329-24849436)
               

               
               8-150, gnl|rn3|chr15 (56219527-56219429)
               

               
               8-150, gnl|xenTro1|scaffold_809 (42696-42597)
               


               
               254-1044, gnl|bosTau2|chr12 (6511403-6510613)
               

               
               254-1044, gnl|Hg17|chr13 (45442107-45441278)
               

               
               254-1044, gnl|Mm7|chr14 (70010639-70011438)

	8-150, gnl\|bosTau2\|chr12 (6518027-6517885)
	8-150, gnl\|canFam2\|chr22 (8137581-8137474)
	8-150, gnl\|danRer3\|chr1 (32097034-32096946)
	8-150, gnl\|dasNov1\|scaffold_18339 (5640-5751)
	8-150, gnl\|echTel1\|scaffold_284042 (31137-31033)
	8-150, gnl\|galGal2\|chr1 (160124927-160125024)
	8-150, gnl\|hg17\|chr13 (45447396-45447505)
	8-150, gnl\|Hg17\|chr13 (45447560-45447418)
	8-150, gnl\|mm7\|chr14 (70008722-70008624)
	8-150, gnl\|Mm7\|chr14 (70008567-70008715)
	8-150, gnl\|monDom2\|scaffold_64 (8700351-8700446)
	8-150, gnl\|panTro1\|chr14 (45163644-45163753)
	8-150, gnl\|rheMac2\|chr17 (24849329-24849436)
	8-150, gnl\|rn3\|chr15 (56219527-56219429)
	8-150, gnl\|xenTro1\|scaffold_809 (42696-42597)

	254-1044, gnl\|bosTau2\|chr12 (6511403-6510613)
	254-1044, gnl\|Hg17\|chr13 (45442107-45441278)
	254-1044, gnl\|Mm7\|chr14 (70010639-70011438)