Non-Coding RNA Search

Ss1.1-Pig4-TMW8004F24.5

Sequence:


               
               AACTCCTGTCTTTTTCTTTTTTCTTTTTTTGGCCACTCCCATGGTGTTCAGAGGTTCTTG
GACCAAGGATCAAACCTGTGCCACAGCAGCAACCCAGGCCAGCTCCTTAATCCTCTGAGC
CACCAGGGAACTCTGGGTTGCAGTCTTTTTTAAAACTAGATTAACGCACGTACTTTTTTT
TTTAAATGAGGACACTTGCTCCCTTCTTAACTAATAACAACAGTTCAGATTCTTTAGTAA
CTGGGTACTGAAATTAGAATGTTTCTGTATTACTCATTTTTTTCTCCTAGTTGTGACAGC
ATCTCACCAATACCAGGGGAAGAGTGTCACTGGCCCATGGGGTGGGCAGTGGTCGAGACA
ATAGCAGTAATGAAATTGGGACTCTCTTCTGTGTTCATTTCTGGTATTTGGAAGTTAAGA
GGCAAGAGTATTGGCAGCAGAATCCCTTTTCAGGGTCACAGTTGCTGCCACATCAGTTAA
TATCAGAGCACTTTAATCCGAAGGATGATATTGTAACTTGATTTAGCTAATTAGCTTTTA
ATGATCTACAGCTGTTTTATTTAATACTTACCTACAGTACTGGGGACCACTGTAAACTTC
TCAGACGACTTGTGTTTTTGTAGTGCTACGCAATGTATCTACATCCCTCCAAAGAGAACT
GTCTATTCGCTAGATCTCTGGAGATGTACGTGTGTGTATTTGTTCTGCAATATGTTTTTG
ACTTGAAGTAAATGTGCTTTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCCTGTCTTTTTCTTTTTTCTTTTTTTGGCCACTCCCATGGTGTTCAGAGGTTCTTG
GACCAAGGATCAAACCTGTGCCACAGCAGCAACCCAGGCCAGCTCCTTAATCCTCTGAGC
CACCAGGGAACTCTGGGTTGCAGTCTTTTTTAAAACTAGATTAACGCACGTACTTTTTTT
TTTAAATGAGGACACTTGCTCCCTTCTTAACTAATAACAACAGTTCAGATTCTTTAGTAA
CTGGGTACTGAAATTAGAATGTTTCTGTATTACTCATTTTTTTCTCCTAGTTGTGACAGC
ATCTCACCAATACCAGGGGAAGAGTGTCACTGGCCCATGGGGTGGGCAGTGGTCGAGACA
ATAGCAGTAATGAAATTGGGACTCTCTTCTGTGTTCATTTCTGGTATTTGGAAGTTAAGA
GGCAAGAGTATTGGCAGCAGAATCCCTTTTCAGGGTCACAGTTGCTGCCACATCAGTTAA
TATCAGAGCACTTTAATCCGAAGGATGATATTGTAACTTGATTTAGCTAATTAGCTTTTA
ATGATCTACAGCTGTTTTATTTAATACTTACCTACAGTACTGGGGACCACTGTAAACTTC
TCAGACGACTTGTGTTTTTGTAGTGCTACGCAATGTATCTACATCCCTCCAAAGAGAACT
GTCTATTCGCTAGATCTCTGGAGATGTACGTGTGTGTATTTGTTCTGCAATATGTTTTTG
ACTTGAAGTAAATGTGCTTTGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-546, + strand, RNAz p=0.745005

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-546, + strand, RNAz p=0.745005

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025151, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025151, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               248-662, gnl|bosTau2|chr12 (4571198-4570777)
               

               
               248-662, gnl|Hg17|chr8 (37837792-37837356)
               


               
               250-638, gnl|bosTau2|chr1 (56930418-56930024)
               

               
               250-638, gnl|Hg17|chr8 (37837784-37837380)
               

               
               250-638, gnl|Mm7|chr8 (25896807-25896440)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-662, gnl|bosTau2|chr12 (4571198-4570777)
               

               
               248-662, gnl|Hg17|chr8 (37837792-37837356)
               


               
               250-638, gnl|bosTau2|chr1 (56930418-56930024)
               

               
               250-638, gnl|Hg17|chr8 (37837784-37837380)
               

               
               250-638, gnl|Mm7|chr8 (25896807-25896440)

	248-662, gnl\|bosTau2\|chr12 (4571198-4570777)
	248-662, gnl\|Hg17\|chr8 (37837792-37837356)

	250-638, gnl\|bosTau2\|chr1 (56930418-56930024)
	250-638, gnl\|Hg17\|chr8 (37837784-37837380)
	250-638, gnl\|Mm7\|chr8 (25896807-25896440)