Non-Coding RNA Search

Ss1.1-Pig4-TMW8004G05.3

Sequence:


               
               AGCAGGCTCAGGACTGGACATGCCATGTAGCCGGGCGGCCGAGCTCACCAGACCAGCAAA
CTTCGTTTATACTGCACTCTTGTGTTTGGAAAACGCTAAATTGTTTTCCCCTTGAAAATT
GTCTTTTTGATGACATGATGCCTCTTGCTCTTGCTGCCGACAGCAGTGTTTGACCTGCTG
GAACCCGTTGTGGCCTGTATCTCTGTGTATTTATTCACGTAGACACGTACAGATAGATAC
CTGCATACATACGTACGTTACCTTGGCAGGACTCCTCGGGCTTACCCAACAGCGTTGGGC
AAGCTTGGCGAGGCTCTAACTGGTAGAGACGTACCTCTGTTTAATGCGCTAGAGCGATAT
ACGGCTGCTGTCAGCACTAGCTGCAAGTGATTGCAAGCCGAGGGGGAGGACCTGGGTTTC
AGAAAAGCGGAAGCGCACCCACCACACACTCCATCAGAGTGTTCTCTGAACCACCCGGGC
CCTCAACACCCCACTGTCCGGGCCGTTGCTTTCTGTGACATGCCCTGGGCTGTCCCGAGG
TGGGCTCTGACGCGGAACTTTGCTCAGGGCTGAGATCTCCTGGTTGCTCGGAGCCTGGCC
CTGTGGCTTCACACACTGGCTTCGCTGAAACCCTCGGTCGATCCCTCGGCCCGTCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGCTCAGGACTGGACATGCCATGTAGCCGGGCGGCCGAGCTCACCAGACCAGCAAA
CTTCGTTTATACTGCACTCTTGTGTTTGGAAAACGCTAAATTGTTTTCCCCTTGAAAATT
GTCTTTTTGATGACATGATGCCTCTTGCTCTTGCTGCCGACAGCAGTGTTTGACCTGCTG
GAACCCGTTGTGGCCTGTATCTCTGTGTATTTATTCACGTAGACACGTACAGATAGATAC
CTGCATACATACGTACGTTACCTTGGCAGGACTCCTCGGGCTTACCCAACAGCGTTGGGC
AAGCTTGGCGAGGCTCTAACTGGTAGAGACGTACCTCTGTTTAATGCGCTAGAGCGATAT
ACGGCTGCTGTCAGCACTAGCTGCAAGTGATTGCAAGCCGAGGGGGAGGACCTGGGTTTC
AGAAAAGCGGAAGCGCACCCACCACACACTCCATCAGAGTGTTCTCTGAACCACCCGGGC
CCTCAACACCCCACTGTCCGGGCCGTTGCTTTCTGTGACATGCCCTGGGCTGTCCCGAGG
TGGGCTCTGACGCGGAACTTTGCTCAGGGCTGAGATCTCCTGGTTGCTCGGAGCCTGGCC
CTGTGGCTTCACACACTGGCTTCGCTGAAACCCTCGGTCGATCCCTCGGCCCGTCCCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               228-380, + strand, RNAz p=0.996883

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-380, + strand, RNAz p=0.996883

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr7 (29054189-29053549)
               

               
               1-660, gnl|Hg17|chr19 (1375874-1376808)
               

               
               1-660, gnl|Mm7|chr10 (80062489-80063152)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr7 (29054189-29053549)
               

               
               1-660, gnl|Hg17|chr19 (1375874-1376808)
               

               
               1-660, gnl|Mm7|chr10 (80062489-80063152)

	1-660, gnl\|bosTau2\|chr7 (29054189-29053549)
	1-660, gnl\|Hg17\|chr19 (1375874-1376808)
	1-660, gnl\|Mm7\|chr10 (80062489-80063152)