Ss1.1-Pig4-TMW8004L08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCGAGGAGGCTCTGCAGAAATGGGAGCAGGCGCTGAGCGTGGGGCAGCGGGGGGATAG CGACAGCACCCCGACCCGGGGGGATGGCCTCCGGAACCCCGAGACTGCTTCGGAGGCCCT GTCTGAGCCAGAGTCACAGCGAAGGGAGTTTGCGGAGAAGCTGGAGACCCCTGCTGCGCC GAGCTTACCACCTGCAGGAGGAGTTTGGGTCCACCTTCCCGTCCGACAGCATGCTGCTGG ACCTTGAGCGGACCCTGATGCTGCCCCTGACCGAGGGCTCGCTGCGCCTGCGGCCTGACG ACGAGGACAGCCTGACTTCCGAGGATTCCTTCTTCTCGGCCACCGAGCTCTTCGAGTCCC TGCAGGTCGGCGATTACCCGCTCCCACTCTCCAGGCCCGCCGCTGCCTACGAGGAGGCCC TGCAGCTGGTGAAGGAGGGGAAAGTGCCCTGCCGGACCCTCAGGACAGAACTGCTGGGCT GCTACAGCGACCAGGACTTTCTGGCTAAGCTGCACTGCGTGCGGCAGGCCTTCGAGGGCC TTCTGGAAGACAAGACCCACCAGCTTTTCTTCGGGGAGGTCGGCCGGCAGATGGTCACGG GCCTGATGACCAAGGCTGAAAAGGTAGCAGCGGGTGGGGCTCTCTTTCCAGGTTTTCTTC CCCCCACTTTTTTATTTTTCTCTTTCTGATTTTTTTCAGTTAGTTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCGAGGAGGCTCTGCAGAAATGGGAGCAGGCGCTGAGCGTGGGGCAGCGGGGGGATAG CGACAGCACCCCGACCCGGGGGGATGGCCTCCGGAACCCCGAGACTGCTTCGGAGGCCCT GTCTGAGCCAGAGTCACAGCGAAGGGAGTTTGCGGAGAAGCTGGAGACCCCTGCTGCGCC GAGCTTACCACCTGCAGGAGGAGTTTGGGTCCACCTTCCCGTCCGACAGCATGCTGCTGG ACCTTGAGCGGACCCTGATGCTGCCCCTGACCGAGGGCTCGCTGCGCCTGCGGCCTGACG ACGAGGACAGCCTGACTTCCGAGGATTCCTTCTTCTCGGCCACCGAGCTCTTCGAGTCCC TGCAGGTCGGCGATTACCCGCTCCCACTCTCCAGGCCCGCCGCTGCCTACGAGGAGGCCC TGCAGCTGGTGAAGGAGGGGAAAGTGCCCTGCCGGACCCTCAGGACAGAACTGCTGGGCT GCTACAGCGACCAGGACTTTCTGGCTAAGCTGCACTGCGTGCGGCAGGCCTTCGAGGGCC TTCTGGAAGACAAGACCCACCAGCTTTTCTTCGGGGAGGTCGGCCGGCAGATGGTCACGG GCCTGATGACCAAGGCTGAAAAGGTAGCAGCGGGTGGGGCTCTCTTTCCAGGTTTTCTTC CCCCCACTTTTTTATTTTTCTCTTTCTGATTTTTTTCAGTTAGTTTGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 535-679, + strand, RNAz p=0.946355 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 535-679, + strand, RNAz p=0.946355 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-127, gnl|bosTau2|chr11 (78838927-78839053) | |
| 1-127, gnl|Hg17|chr9 (128891670-128891796) | |
| 1-127, gnl|Mm7|chr2 (30378854-30378980) | |
| 337-471, gnl|bosTau2|chr11 (78846685-78846819) | |
| 337-471, gnl|canFam2|chr9 (57957498-57957367) | |
| 337-471, gnl|danRer3|chrNA (203112668-203112792) | |
| 337-471, gnl|echTel1|scaffold_298222 (7401-7541) | |
| 337-471, gnl|galGal2|chr17 (5360186-5360051) | |
| 337-471, gnl|hg17|chr9 (128903055-128903186) | |
| 337-471, gnl|Hg17|chr9 (128903043-128903187) | |
| 337-471, gnl|loxAfr1|scaffold_12225 (13603-13734) | |
| 337-471, gnl|mm7|chr2 (30384781-30384908) | |
| 337-471, gnl|Mm7|chr2 (30384779-30384913) | |
| 337-471, gnl|monDom2|scaffold_51 (3699850-3699983) | |
| 337-471, gnl|oryCun1|scaffold_137051 (3612-3744) | |
| 337-471, gnl|panTro1|chr11_random (7208461-7208592) | |
| 337-471, gnl|rheMac2|chr15 (9789909-9789778) | |
| 337-471, gnl|rn3|chr3 (9423689-9423816) | |
| 337-471, gnl|xenTro1|scaffold_1229 (147860-147991) | |
| 535-692, gnl|bosTau2|chr11 (78848190-78848352) | |
| 535-692, gnl|canFam2|chr9 (57956652-57956537) | |
| 535-692, gnl|dasNov1|scaffold_105236 (8613-8488) | |
| 535-692, gnl|echTel1|scaffold_211745 (3159-3039) | |
| 535-692, gnl|galGal2|chr17 (5359229-5359099) | |
| 535-692, gnl|hg17|chr9 (128905355-128905489) | |
| 535-692, gnl|loxAfr1|scaffold_12225 (16992-17121) | |
| 535-692, gnl|mm7|chr2 (30385465-30385580) | |
| 535-692, gnl|monDom2|scaffold_51 (3705195-3705330) | |
| 535-692, gnl|oryCun1|scaffold_137051 (5042-5159) | |
| 535-692, gnl|rheMac2|chr15 (9787456-9787322) | |
| 535-692, gnl|rn3|chr3 (9424360-9424481) | |
| 535-692, gnl|xenTro1|scaffold_1229 (149640-149766) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-127, gnl|bosTau2|chr11 (78838927-78839053) | |
| 1-127, gnl|Hg17|chr9 (128891670-128891796) | |
| 1-127, gnl|Mm7|chr2 (30378854-30378980) | |
| 337-471, gnl|bosTau2|chr11 (78846685-78846819) | |
| 337-471, gnl|canFam2|chr9 (57957498-57957367) | |
| 337-471, gnl|danRer3|chrNA (203112668-203112792) | |
| 337-471, gnl|echTel1|scaffold_298222 (7401-7541) | |
| 337-471, gnl|galGal2|chr17 (5360186-5360051) | |
| 337-471, gnl|hg17|chr9 (128903055-128903186) | |
| 337-471, gnl|Hg17|chr9 (128903043-128903187) | |
| 337-471, gnl|loxAfr1|scaffold_12225 (13603-13734) | |
| 337-471, gnl|mm7|chr2 (30384781-30384908) | |
| 337-471, gnl|Mm7|chr2 (30384779-30384913) | |
| 337-471, gnl|monDom2|scaffold_51 (3699850-3699983) | |
| 337-471, gnl|oryCun1|scaffold_137051 (3612-3744) | |
| 337-471, gnl|panTro1|chr11_random (7208461-7208592) | |
| 337-471, gnl|rheMac2|chr15 (9789909-9789778) | |
| 337-471, gnl|rn3|chr3 (9423689-9423816) | |
| 337-471, gnl|xenTro1|scaffold_1229 (147860-147991) | |
| 535-692, gnl|bosTau2|chr11 (78848190-78848352) | |
| 535-692, gnl|canFam2|chr9 (57956652-57956537) | |
| 535-692, gnl|dasNov1|scaffold_105236 (8613-8488) | |
| 535-692, gnl|echTel1|scaffold_211745 (3159-3039) | |
| 535-692, gnl|galGal2|chr17 (5359229-5359099) | |
| 535-692, gnl|hg17|chr9 (128905355-128905489) | |
| 535-692, gnl|loxAfr1|scaffold_12225 (16992-17121) | |
| 535-692, gnl|mm7|chr2 (30385465-30385580) | |
| 535-692, gnl|monDom2|scaffold_51 (3705195-3705330) | |
| 535-692, gnl|oryCun1|scaffold_137051 (5042-5159) | |
| 535-692, gnl|rheMac2|chr15 (9787456-9787322) | |
| 535-692, gnl|rn3|chr3 (9424360-9424481) | |
| 535-692, gnl|xenTro1|scaffold_1229 (149640-149766) |