Non-Coding RNA Search

Ss1.1-Pig4-TMW8004O18.3

Sequence:


               
               GTCGCCGCCGAAAAGAGCCGCCGGTGCCGGTCCGCGGGGGCGCCATGGCGACTGGAGCGA
ACGCCACGCCGCTGGACTTCCCAAGTAAGAAACGGAAGAGGAGCCGCTGGAACCAAGACA
CAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATCCCCCCTGGACTTACTC
GGGAGCAAGAAAGAGCTTATATAGGTAAATACACGTTCTGCACCCAAACGCTTTTTCACG
TTATTATTCTGAGAAACATTTTATCTGTTCAAAGTTTGAGACTTTGAAGTGTTTTCTTTT
CTTGAGAGGAGGTGTTGTCAGGTATGCTTGTGACTTTGATATAATTCACTTTTGCTCCAA
GAGGCCTGCATTTGTAGCTTTTTGTTTCAGTCTGCTTGTAACAATAGTGTTCTCCATGAG
TGCCAGGAGGGTAGAGGGGCCCACTTAGGAGTGAGAATAGTCCCCCGTCCAGCACCCTCC
CCCACCCTTTTCAGCTGCTGTTCATTGCCACTTGATGAGGTGAGTGTCTCACGCCTCTCT
GGACACGGCCCCAGTGGAGCACATTGCAGGTATTGTAAACCAAGTACCTTTCTCACAGCA
TGGCCTTTCACCATAATTTCATATTCTTCCCTTCCCTAAAATGTGTCTTTTATTCTTTAT
AGGTACTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGCCGCCGAAAAGAGCCGCCGGTGCCGGTCCGCGGGGGCGCCATGGCGACTGGAGCGA
ACGCCACGCCGCTGGACTTCCCAAGTAAGAAACGGAAGAGGAGCCGCTGGAACCAAGACA
CAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATCCCCCCTGGACTTACTC
GGGAGCAAGAAAGAGCTTATATAGGTAAATACACGTTCTGCACCCAAACGCTTTTTCACG
TTATTATTCTGAGAAACATTTTATCTGTTCAAAGTTTGAGACTTTGAAGTGTTTTCTTTT
CTTGAGAGGAGGTGTTGTCAGGTATGCTTGTGACTTTGATATAATTCACTTTTGCTCCAA
GAGGCCTGCATTTGTAGCTTTTTGTTTCAGTCTGCTTGTAACAATAGTGTTCTCCATGAG
TGCCAGGAGGGTAGAGGGGCCCACTTAGGAGTGAGAATAGTCCCCCGTCCAGCACCCTCC
CCCACCCTTTTCAGCTGCTGTTCATTGCCACTTGATGAGGTGAGTGTCTCACGCCTCTCT
GGACACGGCCCCAGTGGAGCACATTGCAGGTATTGTAAACCAAGTACCTTTCTCACAGCA
TGGCCTTTCACCATAATTTCATATTCTTCCCTTCCCTAAAATGTGTCTTTTATTCTTTAT
AGGTACTTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7513390|pir||I68668

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7513390|pir||I68668

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               75-193, - strand, RNAz p=0.887725
               

               
               502-659, + strand, RNAz p=0.601186

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-193, - strand, RNAz p=0.887725
               

               
               502-659, + strand, RNAz p=0.601186

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               75-672, gnl|bosTau2|chr29 (33925884-33925298)
               

               
               75-672, gnl|Hg17|chr11 (64300675-64300094)
               

               
               75-672, gnl|Mm7|chr19 (6260469-6260981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-672, gnl|bosTau2|chr29 (33925884-33925298)
               

               
               75-672, gnl|Hg17|chr11 (64300675-64300094)
               

               
               75-672, gnl|Mm7|chr19 (6260469-6260981)

	75-193, - strand, RNAz p=0.887725
	502-659, + strand, RNAz p=0.601186

	75-672, gnl\|bosTau2\|chr29 (33925884-33925298)
	75-672, gnl\|Hg17\|chr11 (64300675-64300094)
	75-672, gnl\|Mm7\|chr19 (6260469-6260981)