Ss1.1-Pig4-TMW8004O23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTCCTGAGGAGACTCCGGACCCTGAATACCCAGACAATCCAAGACAGAACGGAGTTCG GAAGGACAAGCGGAACCTGGTACAGGAGTGGCAGGCCAAGCACCAGGGAGCCCGGTATGT GTGGAACCGCACGGCGCTCATTCAGGCGTCCCAGGACCCCAGCCTAACACACCTCATGGG CCTTTTTGAGCCGGGAGACATGAAGTATGAAAAGGAACGAGACCTCAGCAGGGACCCCTC CCTGGTGGAGATGACGGAGGTGGCCCTGCGCCTGCTGAGCAGGAACCCCCGTGGCTTCTT CCTCTTCGTGGAGGGAGGCCGCATTGACCACGGACACCATGAGAACATCGCTTATAGGGC GCTGATCGAGGCCGTCATGTTTGACACCGCCATCGACAAGGCTGGCCAGCTCACTAGCGA AGAGGACACACTGACCCTGGTCACGGCCGACCACTCTCATGTCTTCACCTATGGTGGCTA CCCGCTGCGTGGAAGCTCCGTTTTTGGGCTGGCTGATGGCAAGGCCTCTGATGGCAAAGC CTACACCTCCATCCTTTATGGCAATGGCCCGGGATACAAGCTCAGCGAAGGCGCAAGGCC TGATGTTGATGAAACCAAGAGCAGGGACCCCGCATACGTGCACGGCGTGCAGGAGCAGAG CTTCGTGGCGCACGTGATGGCCTTCGCCGCCTGCCTGGAGCCCTACACCAGCGACTGCGA CTTGCCGCCCCCCTCTGGCCCCACCGCCGCCGGGCACCCTGGGCCGGCCGCCTGCACCTC GCTGCTGGCGCTGCTGGCGGGGGCGCTGCTGCTGCTGCTGGCGCCCGCCCTGCACTGACC CCCACTGGCCTCGAAGCCGGAGCCCTGGCTTTGATCAAGCTGCCACCTCGGTGTCCCCAC CTGGGACCGTTCTCCAGACCTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTCCTGAGGAGACTCCGGACCCTGAATACCCAGACAATCCAAGACAGAACGGAGTTCG GAAGGACAAGCGGAACCTGGTACAGGAGTGGCAGGCCAAGCACCAGGGAGCCCGGTATGT GTGGAACCGCACGGCGCTCATTCAGGCGTCCCAGGACCCCAGCCTAACACACCTCATGGG CCTTTTTGAGCCGGGAGACATGAAGTATGAAAAGGAACGAGACCTCAGCAGGGACCCCTC CCTGGTGGAGATGACGGAGGTGGCCCTGCGCCTGCTGAGCAGGAACCCCCGTGGCTTCTT CCTCTTCGTGGAGGGAGGCCGCATTGACCACGGACACCATGAGAACATCGCTTATAGGGC GCTGATCGAGGCCGTCATGTTTGACACCGCCATCGACAAGGCTGGCCAGCTCACTAGCGA AGAGGACACACTGACCCTGGTCACGGCCGACCACTCTCATGTCTTCACCTATGGTGGCTA CCCGCTGCGTGGAAGCTCCGTTTTTGGGCTGGCTGATGGCAAGGCCTCTGATGGCAAAGC CTACACCTCCATCCTTTATGGCAATGGCCCGGGATACAAGCTCAGCGAAGGCGCAAGGCC TGATGTTGATGAAACCAAGAGCAGGGACCCCGCATACGTGCACGGCGTGCAGGAGCAGAG CTTCGTGGCGCACGTGATGGCCTTCGCCGCCTGCCTGGAGCCCTACACCAGCGACTGCGA CTTGCCGCCCCCCTCTGGCCCCACCGCCGCCGGGCACCCTGGGCCGGCCGCCTGCACCTC GCTGCTGGCGCTGCTGGCGGGGGCGCTGCTGCTGCTGCTGGCGCCCGCCCTGCACTGACC CCCACTGGCCTCGAAGCCGGAGCCCTGGCTTTGATCAAGCTGCCACCTCGGTGTCCCCAC CTGGGACCGTTCTCCAGACCTTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-107, - strand, RNAz p=0.711148 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-107, - strand, RNAz p=0.711148 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr2 (72484198-72484304) | |
| 1-107, gnl|canFam2|chr25 (47109258-47109388) | |
| 1-107, gnl|danRer3|chr22 (48733598-48733689) | |
| 1-107, gnl|echTel1|scaffold_55645 (6400-6504) | |
| 1-107, gnl|fr1|chrUn (169265043-169265129) | |
| 1-107, gnl|galGal2|chr9 (14923537-14923648) | |
| 1-107, gnl|hg17|chr2 (233147808-233147938) | |
| 1-107, gnl|Hg17|chr2 (233147809-233147915) | |
| 1-107, gnl|loxAfr1|scaffold_27707 (5805-5684) | |
| 1-107, gnl|mm7|chr1 (87027014-87027141) | |
| 1-107, gnl|Mm7|chr1 (87027015-87027121) | |
| 1-107, gnl|monDom2|scaffold_27 (16801768-16801818) | |
| 1-107, gnl|oryCun1|scaffold_4339 (2932-3038) | |
| 1-107, gnl|panTro1|chr13 (123738813-123738943) | |
| 1-107, gnl|rheMac2|chr12 (96241661-96241791) | |
| 1-107, gnl|rn3|chr9 (86109152-86109280) | |
| 1-107, gnl|tetNig1|chr1 (13933912-13934006) | |
| 1-107, gnl|xenTro1|scaffold_1299 (59988-60084) | |
| 179-296, gnl|bosTau2|chr2 (72484562-72484679) | |
| 179-296, gnl|canFam2|chr25 (47109636-47109774) | |
| 179-296, gnl|danRer3|chr22 (48735630-48735761) | |
| 179-296, gnl|echTel1|scaffold_303580 (3595-3461) | |
| 179-296, gnl|fr1|chrUn (169265444-169265582) | |
| 179-296, gnl|galGal2|chr9 (14923891-14924010) | |
| 179-296, gnl|hg17|chr2 (233148192-233148330) | |
| 179-296, gnl|Hg17|chr2 (233148212-233148329) | |
| 179-296, gnl|loxAfr1|scaffold_27707 (5272-5135) | |
| 179-296, gnl|mm7|chr1 (87027377-87027521) | |
| 179-296, gnl|Mm7|chr1 (87027403-87027520) | |
| 179-296, gnl|monDom2|scaffold_167 (862508-862713) | |
| 179-296, gnl|oryCun1|scaffold_190115 (378-515) | |
| 179-296, gnl|panTro1|chr13 (123739197-123739335) | |
| 179-296, gnl|rheMac2|chr12 (96242049-96242187) | |
| 179-296, gnl|rn3|chr9 (86109512-86109654) | |
| 179-296, gnl|tetNig1|chr1 (13934352-13934471) | |
| 179-296, gnl|xenTro1|scaffold_1299 (61294-61424) | |
| 304-507, gnl|bosTau2|chr2 (72479242-72479444) | |
| 304-507, gnl|canFam2|chr25 (47109863-47109994) | |
| 304-507, gnl|danRer3|chr22 (48719465-48719580) | |
| 304-507, gnl|dasNov1|scaffold_72508 (7530-7389) | |
| 304-507, gnl|fr1|chrUn (169265727-169265854) | |
| 304-507, gnl|galGal2|chr9 (14924115-14924248) | |
| 304-507, gnl|hg17|chr2 (233099121-233099252) | |
| 304-507, gnl|Hg17|chr2 (233099126-233099328) | |
| 304-507, gnl|loxAfr1|scaffold_27707 (5050-4920) | |
| 304-507, gnl|mm7|chr1 (87027598-87027728) | |
| 304-507, gnl|Mm7|chr1 (86970780-86970989) | |
| 304-507, gnl|monDom2|scaffold_167 (863016-863140) | |
| 304-507, gnl|oryCun1|scaffold_190115 (603-730) | |
| 304-507, gnl|panTro1|chr13 (123694576-123694707) | |
| 304-507, gnl|rheMac2|chr12 (96281706-96281837) | |
| 304-507, gnl|rn3|chr9 (86109731-86109861) | |
| 304-507, gnl|tetNig1|chr1 (13934626-13934753) | |
| 304-507, gnl|xenTro1|scaffold_589 (606131-606266) | |
| 638-845, gnl|bosTau2|chr2 (72479990-72480197) | |
| 638-845, gnl|Hg17|chr2 (233099890-233100085) | |
| 638-845, gnl|Mm7|chr1 (86971490-86971666) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr2 (72484198-72484304) | |
| 1-107, gnl|canFam2|chr25 (47109258-47109388) | |
| 1-107, gnl|danRer3|chr22 (48733598-48733689) | |
| 1-107, gnl|echTel1|scaffold_55645 (6400-6504) | |
| 1-107, gnl|fr1|chrUn (169265043-169265129) | |
| 1-107, gnl|galGal2|chr9 (14923537-14923648) | |
| 1-107, gnl|hg17|chr2 (233147808-233147938) | |
| 1-107, gnl|Hg17|chr2 (233147809-233147915) | |
| 1-107, gnl|loxAfr1|scaffold_27707 (5805-5684) | |
| 1-107, gnl|mm7|chr1 (87027014-87027141) | |
| 1-107, gnl|Mm7|chr1 (87027015-87027121) | |
| 1-107, gnl|monDom2|scaffold_27 (16801768-16801818) | |
| 1-107, gnl|oryCun1|scaffold_4339 (2932-3038) | |
| 1-107, gnl|panTro1|chr13 (123738813-123738943) | |
| 1-107, gnl|rheMac2|chr12 (96241661-96241791) | |
| 1-107, gnl|rn3|chr9 (86109152-86109280) | |
| 1-107, gnl|tetNig1|chr1 (13933912-13934006) | |
| 1-107, gnl|xenTro1|scaffold_1299 (59988-60084) | |
| 179-296, gnl|bosTau2|chr2 (72484562-72484679) | |
| 179-296, gnl|canFam2|chr25 (47109636-47109774) | |
| 179-296, gnl|danRer3|chr22 (48735630-48735761) | |
| 179-296, gnl|echTel1|scaffold_303580 (3595-3461) | |
| 179-296, gnl|fr1|chrUn (169265444-169265582) | |
| 179-296, gnl|galGal2|chr9 (14923891-14924010) | |
| 179-296, gnl|hg17|chr2 (233148192-233148330) | |
| 179-296, gnl|Hg17|chr2 (233148212-233148329) | |
| 179-296, gnl|loxAfr1|scaffold_27707 (5272-5135) | |
| 179-296, gnl|mm7|chr1 (87027377-87027521) | |
| 179-296, gnl|Mm7|chr1 (87027403-87027520) | |
| 179-296, gnl|monDom2|scaffold_167 (862508-862713) | |
| 179-296, gnl|oryCun1|scaffold_190115 (378-515) | |
| 179-296, gnl|panTro1|chr13 (123739197-123739335) | |
| 179-296, gnl|rheMac2|chr12 (96242049-96242187) | |
| 179-296, gnl|rn3|chr9 (86109512-86109654) | |
| 179-296, gnl|tetNig1|chr1 (13934352-13934471) | |
| 179-296, gnl|xenTro1|scaffold_1299 (61294-61424) | |
| 304-507, gnl|bosTau2|chr2 (72479242-72479444) | |
| 304-507, gnl|canFam2|chr25 (47109863-47109994) | |
| 304-507, gnl|danRer3|chr22 (48719465-48719580) | |
| 304-507, gnl|dasNov1|scaffold_72508 (7530-7389) | |
| 304-507, gnl|fr1|chrUn (169265727-169265854) | |
| 304-507, gnl|galGal2|chr9 (14924115-14924248) | |
| 304-507, gnl|hg17|chr2 (233099121-233099252) | |
| 304-507, gnl|Hg17|chr2 (233099126-233099328) | |
| 304-507, gnl|loxAfr1|scaffold_27707 (5050-4920) | |
| 304-507, gnl|mm7|chr1 (87027598-87027728) | |
| 304-507, gnl|Mm7|chr1 (86970780-86970989) | |
| 304-507, gnl|monDom2|scaffold_167 (863016-863140) | |
| 304-507, gnl|oryCun1|scaffold_190115 (603-730) | |
| 304-507, gnl|panTro1|chr13 (123694576-123694707) | |
| 304-507, gnl|rheMac2|chr12 (96281706-96281837) | |
| 304-507, gnl|rn3|chr9 (86109731-86109861) | |
| 304-507, gnl|tetNig1|chr1 (13934626-13934753) | |
| 304-507, gnl|xenTro1|scaffold_589 (606131-606266) | |
| 638-845, gnl|bosTau2|chr2 (72479990-72480197) | |
| 638-845, gnl|Hg17|chr2 (233099890-233100085) | |
| 638-845, gnl|Mm7|chr1 (86971490-86971666) |