Non-Coding RNA Search

Ss1.1-Pig4-TMW8006D15.5

Sequence:


               
               TTTGAAACTAATTGTTCTTTGCTGTCATTTTCCCCTCAGGCAGTGTGTGCAGACGTAGAA
AAGAGTGAGCGAGTTGTTGAATCTTGTCAGGCAGAAGTGAACAAATTAAGAAGACAAATC
ATTCAGAGGAAGAATGAAAAAGAACAAGAAAGAAGTGAGTTTCCTATTAATCTTACCATT
CGGTGGCAGAGGGATGATCAAACGAAACTGTAAACTAGGTGACTTCATCTGTACTCAGCA
AGCCCCAGGTTAGGCCGTGGGGGAGGGCACCGACGTGTCTTCAGGCTTTTCCAAAAGAGA
AGTGCTGTTTTTCATGGCCTCCTGCTCACATCCCCCAACTGGAAGCAAAAGAAGACCAAA
GGTAGAAAGGCTGAAGCGAGTTGGAGTAAACCCCGAGAAGCGATGCGGTCTGTTTACAGT
GGGTGTGATGTTTCTGGCCTGCCACACATGTGGGGACTGTGTCCTGTGTGCTTTAGAGCC
TCATAAAAGAGCTACCTGAGGTTCTCTTAACTTCCTGTTTGATGCCTAGGCAGGGTCCCA
ACGAAGGCTTTAAATGCCTCTCTCTTGGTGGCCGTGGATTCCTGGATACCATTAAGCTAA
AGAACCAGCTGATTGAATGAGAATTAGGCCCAGGATCTATTGTATTTAGTTCCAGCGTGG
TAACAGACATATTTGCTATAATGCCACCAGATTTAACATTCATAAGTAAAATCTATAAAA
TACACGGCAAATAACATCAAGTGTAAACGAGAGAAGAGGATAACTTTTCAAATTTAATAA
TATTTGCAAACCAATTAAAATGTAATTTATATTTCCAGGTAAATGATGCCCGATCCATTT
CTACTGTTACGTTTTTCTAAAAATAATCAGAAATGGCAGCATAGGAATGTTAATTACAAC
TTTGTAATTCTAAAATCTTGGAAACAACCTGTTAGAGTAGTTGAATAAACAACAGTAGAA
TAGTCGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAACTAATTGTTCTTTGCTGTCATTTTCCCCTCAGGCAGTGTGTGCAGACGTAGAA
AAGAGTGAGCGAGTTGTTGAATCTTGTCAGGCAGAAGTGAACAAATTAAGAAGACAAATC
ATTCAGAGGAAGAATGAAAAAGAACAAGAAAGAAGTGAGTTTCCTATTAATCTTACCATT
CGGTGGCAGAGGGATGATCAAACGAAACTGTAAACTAGGTGACTTCATCTGTACTCAGCA
AGCCCCAGGTTAGGCCGTGGGGGAGGGCACCGACGTGTCTTCAGGCTTTTCCAAAAGAGA
AGTGCTGTTTTTCATGGCCTCCTGCTCACATCCCCCAACTGGAAGCAAAAGAAGACCAAA
GGTAGAAAGGCTGAAGCGAGTTGGAGTAAACCCCGAGAAGCGATGCGGTCTGTTTACAGT
GGGTGTGATGTTTCTGGCCTGCCACACATGTGGGGACTGTGTCCTGTGTGCTTTAGAGCC
TCATAAAAGAGCTACCTGAGGTTCTCTTAACTTCCTGTTTGATGCCTAGGCAGGGTCCCA
ACGAAGGCTTTAAATGCCTCTCTCTTGGTGGCCGTGGATTCCTGGATACCATTAAGCTAA
AGAACCAGCTGATTGAATGAGAATTAGGCCCAGGATCTATTGTATTTAGTTCCAGCGTGG
TAACAGACATATTTGCTATAATGCCACCAGATTTAACATTCATAAGTAAAATCTATAAAA
TACACGGCAAATAACATCAAGTGTAAACGAGAGAAGAGGATAACTTTTCAAATTTAATAA
TATTTGCAAACCAATTAAAATGTAATTTATATTTCCAGGTAAATGATGCCCGATCCATTT
CTACTGTTACGTTTTTCTAAAAATAATCAGAAATGGCAGCATAGGAATGTTAATTACAAC
TTTGTAATTCTAAAATCTTGGAAACAACCTGTTAGAGTAGTTGAATAAACAACAGTAGAA
TAGTCGCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-562, - strand, RNAz p=0.995928

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-562, - strand, RNAz p=0.995928

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-694, gnl|bosTau2|chr26 (30253651-30254388)
               

               
               1-694, gnl|Hg17|chr10 (126509873-126510931)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-694, gnl|bosTau2|chr26 (30253651-30254388)
               

               
               1-694, gnl|Hg17|chr10 (126509873-126510931)

	1-694, gnl\|bosTau2\|chr26 (30253651-30254388)
	1-694, gnl\|Hg17\|chr10 (126509873-126510931)