Non-Coding RNA Search

Ss1.1-Pig4-TMW8006K04.3

Sequence:


               
               GAACATTCTAAGACATGTTTATCACCAGGCAGTTCTGAAATGTCATTACAGCCTGATCTT
GTTCGGTATGATAATACAGAATCTGAATTCTTGCCAGAAAGTTCAAGTGTAAAGTCTTGT
AAGCATAAGGATAAAAACAAACATCAGAAAGATTTTCACTTAGAATTTGGTGAAAAGTCA
AATGCGCGAAGTAAAGGATGAAGATCACAGTCCAACATTTGAAAATTCAGATTGCACGTT
GAAAAAAATGGATAAAGAGGGTAAAACATTAAAAAAGCATAAATTGAAACATAAAGAGAG
GGAAAAAGAAAAGCATAAAAAAGAAATTGAAGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACATTCTAAGACATGTTTATCACCAGGCAGTTCTGAAATGTCATTACAGCCTGATCTT
GTTCGGTATGATAATACAGAATCTGAATTCTTGCCAGAAAGTTCAAGTGTAAAGTCTTGT
AAGCATAAGGATAAAAACAAACATCAGAAAGATTTTCACTTAGAATTTGGTGAAAAGTCA
AATGCGCGAAGTAAAGGATGAAGATCACAGTCCAACATTTGAAAATTCAGATTGCACGTT
GAAAAAAATGGATAAAGAGGGTAAAACATTAAAAAAGCATAAATTGAAACATAAAGAGAG
GGAAAAAGAAAAGCATAAAAAAGAAATTGAAGGCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.537108
               

               
               140-242, + strand, RNAz p=0.704744

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.537108
               

               
               140-242, + strand, RNAz p=0.704744

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-333, gnl|bosTau2|chr24 (28970994-28971325)
               

               
               1-333, gnl|canFam2|chr7 (78332195-78332782)
               

               
               1-333, gnl|danRer3|chr19 (53677449-53676927)
               

               
               1-333, gnl|dasNov1|scaffold_9213 (39459-38872)
               

               
               1-333, gnl|echTel1|scaffold_238075 (458-994)
               

               
               1-333, gnl|fr1|chrUn (244730380-244729802)
               

               
               1-333, gnl|galGal2|chrUn (116417975-116418562)
               

               
               1-333, gnl|hg17|chr18 (9244802-9245389)
               

               
               1-333, gnl|Hg17|chr18 (9244946-9245277)
               

               
               1-333, gnl|loxAfr1|scaffold_22604 (41694-41107)
               

               
               1-333, gnl|mm7|chr17 (64204452-64203880)
               

               
               1-333, gnl|Mm7|chr17 (64204309-64203990)
               

               
               1-333, gnl|monDom2|scaffold_21 (23476530-23475937)
               

               
               1-333, gnl|panTro1|chr17 (3420044-3419457)
               

               
               1-333, gnl|rheMac2|chr18 (5160516-5159929)
               

               
               1-333, gnl|rn3|chr9 (104975786-104975199)
               

               
               1-333, gnl|tetNig1|chr15_random (1734287-1734865)
               

               
               1-333, gnl|xenTro1|scaffold_333 (1032139-1031546)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-333, gnl|bosTau2|chr24 (28970994-28971325)
               

               
               1-333, gnl|canFam2|chr7 (78332195-78332782)
               

               
               1-333, gnl|danRer3|chr19 (53677449-53676927)
               

               
               1-333, gnl|dasNov1|scaffold_9213 (39459-38872)
               

               
               1-333, gnl|echTel1|scaffold_238075 (458-994)
               

               
               1-333, gnl|fr1|chrUn (244730380-244729802)
               

               
               1-333, gnl|galGal2|chrUn (116417975-116418562)
               

               
               1-333, gnl|hg17|chr18 (9244802-9245389)
               

               
               1-333, gnl|Hg17|chr18 (9244946-9245277)
               

               
               1-333, gnl|loxAfr1|scaffold_22604 (41694-41107)
               

               
               1-333, gnl|mm7|chr17 (64204452-64203880)
               

               
               1-333, gnl|Mm7|chr17 (64204309-64203990)
               

               
               1-333, gnl|monDom2|scaffold_21 (23476530-23475937)
               

               
               1-333, gnl|panTro1|chr17 (3420044-3419457)
               

               
               1-333, gnl|rheMac2|chr18 (5160516-5159929)
               

               
               1-333, gnl|rn3|chr9 (104975786-104975199)
               

               
               1-333, gnl|tetNig1|chr15_random (1734287-1734865)
               

               
               1-333, gnl|xenTro1|scaffold_333 (1032139-1031546)

	120-239, - strand, RNAz p=0.537108
	140-242, + strand, RNAz p=0.704744

	1-333, gnl\|bosTau2\|chr24 (28970994-28971325)
	1-333, gnl\|canFam2\|chr7 (78332195-78332782)
	1-333, gnl\|danRer3\|chr19 (53677449-53676927)
	1-333, gnl\|dasNov1\|scaffold_9213 (39459-38872)
	1-333, gnl\|echTel1\|scaffold_238075 (458-994)
	1-333, gnl\|fr1\|chrUn (244730380-244729802)
	1-333, gnl\|galGal2\|chrUn (116417975-116418562)
	1-333, gnl\|hg17\|chr18 (9244802-9245389)
	1-333, gnl\|Hg17\|chr18 (9244946-9245277)
	1-333, gnl\|loxAfr1\|scaffold_22604 (41694-41107)
	1-333, gnl\|mm7\|chr17 (64204452-64203880)
	1-333, gnl\|Mm7\|chr17 (64204309-64203990)
	1-333, gnl\|monDom2\|scaffold_21 (23476530-23475937)
	1-333, gnl\|panTro1\|chr17 (3420044-3419457)
	1-333, gnl\|rheMac2\|chr18 (5160516-5159929)
	1-333, gnl\|rn3\|chr9 (104975786-104975199)
	1-333, gnl\|tetNig1\|chr15_random (1734287-1734865)
	1-333, gnl\|xenTro1\|scaffold_333 (1032139-1031546)