Non-Coding RNA Search

Ss1.1-Pig4-TMW8006K10.3

Sequence:


               
               AGAGCTCAATTTTTAATCATCTTAAAGATCTGTGGGCTTTTCTCAAGGAAGTACTAAACT
TCCTGACTAGATTTCTTATTTCCCCACCATGTGCTGTCTGGGAGATGACTACATCAGATA
TGGTTTTTCAGGGCTGTACAGACTCACCCCAAGATGACCAGGCTCATGTGCCCTGTCTGG
CAAGATAGGCTCCACTGGTGATTTGCTTGCAGATTATGGCCACTGCCATCATTGATGACA
AATGTCACACAGGCTTCTATACCAGCGCCACTGGCTTATTTGGAGCCCTGAGCCGCAAAG
TTTCCCGTTACCTGTTCTGATTCACCTTTGGGAATCTGGGACCCTGTCAGAGATTTCTTG
GAGTTTTTCAAACTTGGGTTTTTCAAGGTCACTTTTGGTGCAAAGCCTGGAGTGCAGTTC
AACCCGTCTTACTGTGATTTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTCAATTTTTAATCATCTTAAAGATCTGTGGGCTTTTCTCAAGGAAGTACTAAACT
TCCTGACTAGATTTCTTATTTCCCCACCATGTGCTGTCTGGGAGATGACTACATCAGATA
TGGTTTTTCAGGGCTGTACAGACTCACCCCAAGATGACCAGGCTCATGTGCCCTGTCTGG
CAAGATAGGCTCCACTGGTGATTTGCTTGCAGATTATGGCCACTGCCATCATTGATGACA
AATGTCACACAGGCTTCTATACCAGCGCCACTGGCTTATTTGGAGCCCTGAGCCGCAAAG
TTTCCCGTTACCTGTTCTGATTCACCTTTGGGAATCTGGGACCCTGTCAGAGATTTCTTG
GAGTTTTTCAAACTTGGGTTTTTCAAGGTCACTTTTGGTGCAAAGCCTGGAGTGCAGTTC
AACCCGTCTTACTGTGATTTGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-124, - strand, RNAz p=0.972048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-124, - strand, RNAz p=0.972048

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               9-395, gnl|bosTau2|chr1 (39090300-39089908)
               

               
               9-395, gnl|canFam2|chr33 (28977315-28977670)
               

               
               9-395, gnl|dasNov1|scaffold_69474 (7057-6696)
               

               
               9-395, gnl|hg17|chr3 (124077187-124077555)
               

               
               9-395, gnl|Hg17|chr3 (124077200-124077590)
               

               
               9-395, gnl|loxAfr1|scaffold_42575 (7235-7703)
               

               
               9-395, gnl|mm7|chr16 (35376186-35375915)
               

               
               9-395, gnl|Mm7|chr16 (35376363-35375878)
               

               
               9-395, gnl|oryCun1|scaffold_166157 (10955-11304)
               

               
               9-395, gnl|panTro1|chr2_random (7086187-7085819)
               

               
               9-395, gnl|rheMac2|chr2 (42864168-42864535)
               

               
               9-395, gnl|rn3|chr11 (66963185-66963458)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-395, gnl|bosTau2|chr1 (39090300-39089908)
               

               
               9-395, gnl|canFam2|chr33 (28977315-28977670)
               

               
               9-395, gnl|dasNov1|scaffold_69474 (7057-6696)
               

               
               9-395, gnl|hg17|chr3 (124077187-124077555)
               

               
               9-395, gnl|Hg17|chr3 (124077200-124077590)
               

               
               9-395, gnl|loxAfr1|scaffold_42575 (7235-7703)
               

               
               9-395, gnl|mm7|chr16 (35376186-35375915)
               

               
               9-395, gnl|Mm7|chr16 (35376363-35375878)
               

               
               9-395, gnl|oryCun1|scaffold_166157 (10955-11304)
               

               
               9-395, gnl|panTro1|chr2_random (7086187-7085819)
               

               
               9-395, gnl|rheMac2|chr2 (42864168-42864535)
               

               
               9-395, gnl|rn3|chr11 (66963185-66963458)

	9-395, gnl\|bosTau2\|chr1 (39090300-39089908)
	9-395, gnl\|canFam2\|chr33 (28977315-28977670)
	9-395, gnl\|dasNov1\|scaffold_69474 (7057-6696)
	9-395, gnl\|hg17\|chr3 (124077187-124077555)
	9-395, gnl\|Hg17\|chr3 (124077200-124077590)
	9-395, gnl\|loxAfr1\|scaffold_42575 (7235-7703)
	9-395, gnl\|mm7\|chr16 (35376186-35375915)
	9-395, gnl\|Mm7\|chr16 (35376363-35375878)
	9-395, gnl\|oryCun1\|scaffold_166157 (10955-11304)
	9-395, gnl\|panTro1\|chr2_random (7086187-7085819)
	9-395, gnl\|rheMac2\|chr2 (42864168-42864535)
	9-395, gnl\|rn3\|chr11 (66963185-66963458)