Non-Coding RNA Search

Ss1.1-Pig4-TMW8006M12.5

Sequence:


               
               CTTATCCATGTGAGGAATGTGGGCAGGTATGCAGCTCTGTCTCCCACCTAAGCCCTCCTG
GAGGAACAGACATTGTAAAGAAACCCTATAACTGTCAGGATTCTGGGATAGCATCTAAGA
GATTTGTGAAGAGTCATAGTAGTAAACAGTCTTTAGAGTGTAAGAAATGTGGACAAGTTT
TCACTTGTCCCTCTTCCTTTCGAGAACATATGAGAAGCCACCATGGACAGAAAATCCACG
TGTGTAGAGTATGTGGGAAATCCTTTATGTATTATTCCTACCTTTTAAGACATGTGAGAA
CTCACACTGGAGAGAAACCCTATGAATGTAAGGAATATGAGAAAGCCTTCCAATATCCCA
CATTCCTGGGAGGACATGTGACAATACATACTGGAGAGAAACCTTATGTTTGTGCAGAAT
GTGGGAAAGCCTTCAGTTGTCCCAAATATTTCAGAAGACACCTGAAAACCCACAGTGGAG
TGAAACCCTATGAATGTACAGAATGTGGGAAAGCCTACAGTTGTTCCTCATCCCTTCGAG
AACATGTGAGGACACACAGCGAAGAGAAACCCTATGAATGTCAGCACTGTGGCAAAGCCT
TCAGGCATCAGC------------------------------------------------
------------------------------------CATCCCTCCGAGAGCATGAGAGAA
TACACACTGGGGAGAGACCCTTCGAATGTCAGCACTGTGGGAAAGCCTTTACTCGTCACG
CCTCTCTTCGAGGACACATGAGAACACACAGTGGGGAGAGAGCCTATGAATGTACCCAGT
GTGGGAAAGCCTTCTGTTGGCCCTCATCTTTAAGAAAACATGTAAGAATGCACAGTGAGG
AGAAACCCTATGGGTGTCAGCAGTGTGGAAAAGCCTTCTGGTATCCTGCCAATCTGCGAG
GACACATGAGGACACACACTGGGGAGAAGCACTGACTGCAGGGACTGTAGGAGAGACCTC
ATTCTCTCTTGTGACTTATAATGTGAGCAACACACTGTAGAAAAGCCTTATGAATGGGAA
AAATGTGGAAATGTCTTCAGCACTTCACTTATTTTGTACATGAAGACTCAGGGCATGACA
GAAATCTTTCAATGGGTATAAATATGGTTTTTCCTTTGTAAGTGGCTTGGCTTTAATAGA
ATCCCAGTGTATTAATTTCTAGTTCATGTTGCTGATCTGAATGTTTATGATAATAGCTAT
CTTTCTATGTACTCTTCATCTGCACTACCTGCATTTTGTTATCTCAGACTTTGAATAATC
ATGCAGTCTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTATCCATGTGAGGAATGTGGGCAGGTATGCAGCTCTGTCTCCCACCTAAGCCCTCCTG
GAGGAACAGACATTGTAAAGAAACCCTATAACTGTCAGGATTCTGGGATAGCATCTAAGA
GATTTGTGAAGAGTCATAGTAGTAAACAGTCTTTAGAGTGTAAGAAATGTGGACAAGTTT
TCACTTGTCCCTCTTCCTTTCGAGAACATATGAGAAGCCACCATGGACAGAAAATCCACG
TGTGTAGAGTATGTGGGAAATCCTTTATGTATTATTCCTACCTTTTAAGACATGTGAGAA
CTCACACTGGAGAGAAACCCTATGAATGTAAGGAATATGAGAAAGCCTTCCAATATCCCA
CATTCCTGGGAGGACATGTGACAATACATACTGGAGAGAAACCTTATGTTTGTGCAGAAT
GTGGGAAAGCCTTCAGTTGTCCCAAATATTTCAGAAGACACCTGAAAACCCACAGTGGAG
TGAAACCCTATGAATGTACAGAATGTGGGAAAGCCTACAGTTGTTCCTCATCCCTTCGAG
AACATGTGAGGACACACAGCGAAGAGAAACCCTATGAATGTCAGCACTGTGGCAAAGCCT
TCAGGCATCAGC------------------------------------------------
------------------------------------CATCCCTCCGAGAGCATGAGAGAA
TACACACTGGGGAGAGACCCTTCGAATGTCAGCACTGTGGGAAAGCCTTTACTCGTCACG
CCTCTCTTCGAGGACACATGAGAACACACAGTGGGGAGAGAGCCTATGAATGTACCCAGT
GTGGGAAAGCCTTCTGTTGGCCCTCATCTTTAAGAAAACATGTAAGAATGCACAGTGAGG
AGAAACCCTATGGGTGTCAGCAGTGTGGAAAAGCCTTCTGGTATCCTGCCAATCTGCGAG
GACACATGAGGACACACACTGGGGAGAAGCACTGACTGCAGGGACTGTAGGAGAGACCTC
ATTCTCTCTTGTGACTTATAATGTGAGCAACACACTGTAGAAAAGCCTTATGAATGGGAA
AAATGTGGAAATGTCTTCAGCACTTCACTTATTTTGTACATGAAGACTCAGGGCATGACA
GAAATCTTTCAATGGGTATAAATATGGTTTTTCCTTTGTAAGTGGCTTGGCTTTAATAGA
ATCCCAGTGTATTAATTTCTAGTTCATGTTGCTGATCTGAATGTTTATGATAATAGCTAT
CTTTCTATGTACTCTTCATCTGCACTACCTGCATTTTGTTATCTCAGACTTTGAATAATC
ATGCAGTCTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38511736|gb|AAH62561.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38511736|gb|AAH62561.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.850777
               

               
               794-913, - strand, RNAz p=0.872476

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.850777
               

               
               794-913, - strand, RNAz p=0.872476

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-1233, gnl|bosTau2|chr22 (14467761-14468978)
               


               
               157-1070, gnl|bosTau2|chr18 (33064754-33063827)
               

               
               157-1070, gnl|Hg17|chr19 (11729265-11728345)
               

               
               157-1070, gnl|Mm7|chr8 (108689139-108690066)
               


               
               158-1060, gnl|bosTau2|chr11 (74555091-74554176)
               

               
               158-1060, gnl|Hg17|chr9 (127286115-127287030)
               

               
               158-1060, gnl|Mm7|chr11 (62796287-62795385)
               


               
               242-1017, gnl|bosTau2|chr10 (8996832-8996049)
               

               
               242-1017, gnl|Hg17|chr19 (42818637-42817770)
               

               
               242-1017, gnl|Mm7|chr2 (127310263-127309564)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1233, gnl|bosTau2|chr22 (14467761-14468978)
               


               
               157-1070, gnl|bosTau2|chr18 (33064754-33063827)
               

               
               157-1070, gnl|Hg17|chr19 (11729265-11728345)
               

               
               157-1070, gnl|Mm7|chr8 (108689139-108690066)
               


               
               158-1060, gnl|bosTau2|chr11 (74555091-74554176)
               

               
               158-1060, gnl|Hg17|chr9 (127286115-127287030)
               

               
               158-1060, gnl|Mm7|chr11 (62796287-62795385)
               


               
               242-1017, gnl|bosTau2|chr10 (8996832-8996049)
               

               
               242-1017, gnl|Hg17|chr19 (42818637-42817770)
               

               
               242-1017, gnl|Mm7|chr2 (127310263-127309564)

	80-199, - strand, RNAz p=0.850777
	794-913, - strand, RNAz p=0.872476

	1-1233, gnl\|bosTau2\|chr22 (14467761-14468978)

	157-1070, gnl\|bosTau2\|chr18 (33064754-33063827)
	157-1070, gnl\|Hg17\|chr19 (11729265-11728345)
	157-1070, gnl\|Mm7\|chr8 (108689139-108690066)

	158-1060, gnl\|bosTau2\|chr11 (74555091-74554176)
	158-1060, gnl\|Hg17\|chr9 (127286115-127287030)
	158-1060, gnl\|Mm7\|chr11 (62796287-62795385)

	242-1017, gnl\|bosTau2\|chr10 (8996832-8996049)
	242-1017, gnl\|Hg17\|chr19 (42818637-42817770)
	242-1017, gnl\|Mm7\|chr2 (127310263-127309564)