Non-Coding RNA Search

Ss1.1-Pig4-TMW8006O16.3

Sequence:


               
               AATGGTACACATTTGAAATCAAAGGATACCCTGGCTTATAGCTAAGGGCACCTCAGGTCC
TAAAACTAATAGAGGTGAGGGTACAAATCCATCTGGCATCAGAGATTTTGTTTTAACCTG
GACATGTCATAAGGATTCTGCTCTACTCTAGAGTGATTCCTGGCAGGAGCAGGAAGGCAT
AAATGTCACTGAACAACCTCAGAAGCAAGAACCTCCTTGCCTGAAGAGTAACCTGGCCTC
TGTGTAGAAATTCCATCTTGCCGTGTTACCAAATGACAGAAAATATCCCATTTCATCTCT
CCATGTTCATCAAAACCTGAATTTAAGTTGCACTTTAGAGACAAATATCCTTTAAAGTGT
TCTTTCTTTGGATGGATAAAGAATAAATAATGCAAGTAAATGGAAATGAAAAAAAAATGT
TAAACAATGGCAGGCATTGGCTGTAACTGGTGAATGGTTATTGTTCTGTTTTAGAGTGAT
AAAGCCCTGAATTTAATGAGTCCACTTTGTTACATGTATAAATATGGACAAATCATGTAA
AGTAATTACCATCTGGCAGTGTACTGTGAAGAGCTAGTAAGTTAATTTTAAAATATATTT
GATAATTTAATATATTTAATGTATTTTAAAGATCCTAGAGCATTATGGGTACCTAGTAGT
TGGCAACTAATGGGTCCTTTAAGCTCTTACATTGAAAGACATATAGGTTGACTAAAGTTA
TCTCAAGTATTGGAGAAATTATTTTGAGGATATATATGGATTAAGGAAGCTAGGAATTCT
GATCCTGCAGCAGATATTTATGGAAACACAGTAATAGGACACTTCTAGATCTCAGCTTAG
AAACTAGGTAAGGCTAAAGTAGTGCTAGTCCCCAATTCTTTTTAGTAAGCCAGAGGAGTG
CACCCCCCACTGTGACTAATTCTACTCCACTTCTGTATCTACCACTCTTGTTTCTAGCAA
CCAATCACCTTATTCTCTGTTTAACATTTTTCAACCTTGAACATGCACTTATAGTATCTA
GTTATACACAAATGTCCTGACTTATTAAAAAGGCAAGGCACAGATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGTACACATTTGAAATCAAAGGATACCCTGGCTTATAGCTAAGGGCACCTCAGGTCC
TAAAACTAATAGAGGTGAGGGTACAAATCCATCTGGCATCAGAGATTTTGTTTTAACCTG
GACATGTCATAAGGATTCTGCTCTACTCTAGAGTGATTCCTGGCAGGAGCAGGAAGGCAT
AAATGTCACTGAACAACCTCAGAAGCAAGAACCTCCTTGCCTGAAGAGTAACCTGGCCTC
TGTGTAGAAATTCCATCTTGCCGTGTTACCAAATGACAGAAAATATCCCATTTCATCTCT
CCATGTTCATCAAAACCTGAATTTAAGTTGCACTTTAGAGACAAATATCCTTTAAAGTGT
TCTTTCTTTGGATGGATAAAGAATAAATAATGCAAGTAAATGGAAATGAAAAAAAAATGT
TAAACAATGGCAGGCATTGGCTGTAACTGGTGAATGGTTATTGTTCTGTTTTAGAGTGAT
AAAGCCCTGAATTTAATGAGTCCACTTTGTTACATGTATAAATATGGACAAATCATGTAA
AGTAATTACCATCTGGCAGTGTACTGTGAAGAGCTAGTAAGTTAATTTTAAAATATATTT
GATAATTTAATATATTTAATGTATTTTAAAGATCCTAGAGCATTATGGGTACCTAGTAGT
TGGCAACTAATGGGTCCTTTAAGCTCTTACATTGAAAGACATATAGGTTGACTAAAGTTA
TCTCAAGTATTGGAGAAATTATTTTGAGGATATATATGGATTAAGGAAGCTAGGAATTCT
GATCCTGCAGCAGATATTTATGGAAACACAGTAATAGGACACTTCTAGATCTCAGCTTAG
AAACTAGGTAAGGCTAAAGTAGTGCTAGTCCCCAATTCTTTTTAGTAAGCCAGAGGAGTG
CACCCCCCACTGTGACTAATTCTACTCCACTTCTGTATCTACCACTCTTGTTTCTAGCAA
CCAATCACCTTATTCTCTGTTTAACATTTTTCAACCTTGAACATGCACTTATAGTATCTA
GTTATACACAAATGTCCTGACTTATTAAAAAGGCAAGGCACAGATTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               572-688, + strand, RNAz p=0.997105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               572-688, + strand, RNAz p=0.997105

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-688, gnl|bosTau2|chr4 (62822205-62822883)
               

               
               3-688, gnl|Hg17|chr7 (145364880-145365471)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-688, gnl|bosTau2|chr4 (62822205-62822883)
               

               
               3-688, gnl|Hg17|chr7 (145364880-145365471)

	3-688, gnl\|bosTau2\|chr4 (62822205-62822883)
	3-688, gnl\|Hg17\|chr7 (145364880-145365471)