Non-Coding RNA Search

Ss1.1-Pig4-TMW8007A10.3

Sequence:


               
               CTCCTTCAGATGGGACAAATAAATCCTGCCCACTCAGTATTCTATTCCCAATAGTCGTTG
TTTAGTCACTGAGTCATGTCAGACTCTTTGTGACTCCATAGACTGTAGCCCACCAGGCTC
CTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGCGTGGGTTGCCATTCCCTTCTCCAG
GGATCTTCCTGACTCAGGGATTGAACCCATGTCTCCTACATTAGCAAGCAGATTCTTTAC
CACTGGAGCCCATATTCTCAACAGTATAGACTATATTTCAGCCCTCAAGTTCTCAAGCTT
CTTCTTGCCTCCTTTACTTGTTTGTTCCTGCCAGGTTCCTGTTGGCACTGGAATTTGTGA
CCCCTGATTTATAGGATGTGCTCAACTGTAAGCAATCTATATGCATTAGTATGTGCATAA
CACACATAATTGAAATAATCCTGCTTGAACACCCAACAAATAGTTTCAAGGAAAAACAAA
CAAAAAATATACAGAATGTTTGAAATATTTCAGCTATTTTCTTTATTTTATCTCCTTAGG
TAATTATAACCCACTATAGACATGTTCTGGGGTTTCACTGGATGACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTTCAGATGGGACAAATAAATCCTGCCCACTCAGTATTCTATTCCCAATAGTCGTTG
TTTAGTCACTGAGTCATGTCAGACTCTTTGTGACTCCATAGACTGTAGCCCACCAGGCTC
CTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGCGTGGGTTGCCATTCCCTTCTCCAG
GGATCTTCCTGACTCAGGGATTGAACCCATGTCTCCTACATTAGCAAGCAGATTCTTTAC
CACTGGAGCCCATATTCTCAACAGTATAGACTATATTTCAGCCCTCAAGTTCTCAAGCTT
CTTCTTGCCTCCTTTACTTGTTTGTTCCTGCCAGGTTCCTGTTGGCACTGGAATTTGTGA
CCCCTGATTTATAGGATGTGCTCAACTGTAAGCAATCTATATGCATTAGTATGTGCATAA
CACACATAATTGAAATAATCCTGCTTGAACACCCAACAAATAGTTTCAAGGAAAAACAAA
CAAAAAATATACAGAATGTTTGAAATATTTCAGCTATTTTCTTTATTTTATCTCCTTAGG
TAATTATAACCCACTATAGACATGTTCTGGGGTTTCACTGGATGACCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824833|ref|XP_611263.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824833|ref|XP_611263.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-320, - strand, RNAz p=0.99749
               

               
               33-520, - strand, RNAz p=0.999643
               

               
               108-255, - strand, RNAz p=0.978694

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-320, - strand, RNAz p=0.99749
               

               
               33-520, - strand, RNAz p=0.999643
               

               
               108-255, - strand, RNAz p=0.978694

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-588, gnl|bosTau2|chr1 (61788619-61788030)
               


               
               16-275, gnl|bosTau2|chr10 (34932107-34932369)
               


               
               33-255, gnl|bosTau2|chr10 (19611996-19612220)
               

               
               33-255, gnl|canFam2|chr30 (6706804-6706994)
               

               
               33-255, gnl|dasNov1|scaffold_194469 (3421-3623)
               

               
               33-255, gnl|hg17|chr15 (34173034-34173231)
               

               
               33-255, gnl|loxAfr1|scaffold_31100 (21510-21736)
               

               
               33-255, gnl|oryCun1|scaffold_68990 (3303-3107)
               

               
               33-255, gnl|panTro1|chr16 (33967356-33967553)
               

               
               33-255, gnl|rheMac2|chr7 (14448817-14449006)
               


               
               52-253, gnl|bosTau2|chr10 (25549147-25549347)
               


               
               59-250, gnl|bosTau2|chr10 (50541959-50542151)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr1 (61788619-61788030)
               


               
               16-275, gnl|bosTau2|chr10 (34932107-34932369)
               


               
               33-255, gnl|bosTau2|chr10 (19611996-19612220)
               

               
               33-255, gnl|canFam2|chr30 (6706804-6706994)
               

               
               33-255, gnl|dasNov1|scaffold_194469 (3421-3623)
               

               
               33-255, gnl|hg17|chr15 (34173034-34173231)
               

               
               33-255, gnl|loxAfr1|scaffold_31100 (21510-21736)
               

               
               33-255, gnl|oryCun1|scaffold_68990 (3303-3107)
               

               
               33-255, gnl|panTro1|chr16 (33967356-33967553)
               

               
               33-255, gnl|rheMac2|chr7 (14448817-14449006)
               


               
               52-253, gnl|bosTau2|chr10 (25549147-25549347)
               


               
               59-250, gnl|bosTau2|chr10 (50541959-50542151)

	1-320, - strand, RNAz p=0.99749
	33-520, - strand, RNAz p=0.999643
	108-255, - strand, RNAz p=0.978694

	1-588, gnl\|bosTau2\|chr1 (61788619-61788030)

	16-275, gnl\|bosTau2\|chr10 (34932107-34932369)

	33-255, gnl\|bosTau2\|chr10 (19611996-19612220)
	33-255, gnl\|canFam2\|chr30 (6706804-6706994)
	33-255, gnl\|dasNov1\|scaffold_194469 (3421-3623)
	33-255, gnl\|hg17\|chr15 (34173034-34173231)
	33-255, gnl\|loxAfr1\|scaffold_31100 (21510-21736)
	33-255, gnl\|oryCun1\|scaffold_68990 (3303-3107)
	33-255, gnl\|panTro1\|chr16 (33967356-33967553)
	33-255, gnl\|rheMac2\|chr7 (14448817-14449006)

	52-253, gnl\|bosTau2\|chr10 (25549147-25549347)

	59-250, gnl\|bosTau2\|chr10 (50541959-50542151)