Non-Coding RNA Search

Ss1.1-Pig4-TMW8009H10.5

Sequence:


               
               GGGTTGTGATGATCGTTGTACAATCATAAATGTAATGAAATTCATTAAAAGAAAGAAAAA
TAATACAAAGCCCTGCATGAACTGTTGGTGGTATCACCGTGGCATAGGCCGGCGTTTCTT
CATGTATATTCCCACGTTGGACCAGAAGCTTCTAGAAGCAGGTCATGTGCTGGTCCTCAC
TGGGCCCAAGTCTAGCCAGAAGCTGACAGAGATGGGCTTCTGAGGGTTTGAGCTGGCAGT
TTGGAGGGGGAGGGGGTGTCACAGGTGTCCCTTTGTACTCCGAGCAACAATAGCTCATAG
GCCTTGTCACCAACACCCTCCCCTCTTCCCTCACAGGTGCAGGTGGGAAGCACACCTCAG
GACCAAAGAATTGTCGGGTACATCTCCTGCACACACCTGCATGCCCTGCCAGGTAGGGCC
CAGGGGCCCGTGCTTCAGGGGTGGGGAATGTCCCTTTAGAGGGTGGGATTGGCCTGGCTG
GGGTCTGGCTGTAGCTACATCATCTCTTTGTGGTTCTGTCCCAGAGGACAGTGACATTCG
GTGTGAGCAGCTGAACATGCTTCAGGACTGGCTGGCTGATTTCCGAAAATCTACCTCCTC
GTCCAGCACAGCCAACCCCGAGGAGCTGGTGGCATTTGACATCATCTGCGGAGATTTTAA
CTTTGACAACTGCTCCTCCGGTGAGGCGTGCTCCTCCCCGTTAGGGTTGGCCACCGGGGG
AGGCGTGGGCTCCAGTCAAGGCTGGCAAGACTGGGGTTAGGTTAGGCAGCTTGAAGAACT
TCCTGCTCCTCAGGAGCAGGGGGGTGGGACATTTAATAAGACTATGATTCTTCTGCCCCT
GAGAAATCCTAGAATGAGAAGAACTCTGCCTAGAAAGCTCAGAGGCCTCTTTGCTGGAAA
AAAAAGAGATCTCCTACAGATGAACCTCTGGCAGGGAAGGCTGGGAGCCTGTGAAAGCCT
AAGGGCAGGTCAGCTAATGGTACTCACCAAGTCATTGTTCACCTCTCAATCTTCACCAGG
CACAATTGTATTAGCTGTGGTGGAGGGGGTGGCAGTCTCAAGGGCGCAGAGAACCCAGTG
ACAGATGATCATAGATCCATCTGTGTTGGGAATAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTGTGATGATCGTTGTACAATCATAAATGTAATGAAATTCATTAAAAGAAAGAAAAA
TAATACAAAGCCCTGCATGAACTGTTGGTGGTATCACCGTGGCATAGGCCGGCGTTTCTT
CATGTATATTCCCACGTTGGACCAGAAGCTTCTAGAAGCAGGTCATGTGCTGGTCCTCAC
TGGGCCCAAGTCTAGCCAGAAGCTGACAGAGATGGGCTTCTGAGGGTTTGAGCTGGCAGT
TTGGAGGGGGAGGGGGTGTCACAGGTGTCCCTTTGTACTCCGAGCAACAATAGCTCATAG
GCCTTGTCACCAACACCCTCCCCTCTTCCCTCACAGGTGCAGGTGGGAAGCACACCTCAG
GACCAAAGAATTGTCGGGTACATCTCCTGCACACACCTGCATGCCCTGCCAGGTAGGGCC
CAGGGGCCCGTGCTTCAGGGGTGGGGAATGTCCCTTTAGAGGGTGGGATTGGCCTGGCTG
GGGTCTGGCTGTAGCTACATCATCTCTTTGTGGTTCTGTCCCAGAGGACAGTGACATTCG
GTGTGAGCAGCTGAACATGCTTCAGGACTGGCTGGCTGATTTCCGAAAATCTACCTCCTC
GTCCAGCACAGCCAACCCCGAGGAGCTGGTGGCATTTGACATCATCTGCGGAGATTTTAA
CTTTGACAACTGCTCCTCCGGTGAGGCGTGCTCCTCCCCGTTAGGGTTGGCCACCGGGGG
AGGCGTGGGCTCCAGTCAAGGCTGGCAAGACTGGGGTTAGGTTAGGCAGCTTGAAGAACT
TCCTGCTCCTCAGGAGCAGGGGGGTGGGACATTTAATAAGACTATGATTCTTCTGCCCCT
GAGAAATCCTAGAATGAGAAGAACTCTGCCTAGAAAGCTCAGAGGCCTCTTTGCTGGAAA
AAAAAGAGATCTCCTACAGATGAACCTCTGGCAGGGAAGGCTGGGAGCCTGTGAAAGCCT
AAGGGCAGGTCAGCTAATGGTACTCACCAAGTCATTGTTCACCTCTCAATCTTCACCAGG
CACAATTGTATTAGCTGTGGTGGAGGGGGTGGCAGTCTCAAGGGCGCAGAGAACCCAGTG
ACAGATGATCATAGATCCATCTGTGTTGGGAATAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               783-973, - strand, RNAz p=0.999689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               783-973, - strand, RNAz p=0.999689

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               65-732, gnl|bosTau2|chr18 (14627596-14628250)
               

               
               65-732, gnl|Hg17|chr16 (66956747-66956057)
               

               
               65-732, gnl|Mm7|chr8 (104859138-104858379)
               


               
               783-1104, gnl|bosTau2|chr18 (14628250-14628573)
               

               
               783-1104, gnl|Hg17|chr16 (66956057-66955538)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-732, gnl|bosTau2|chr18 (14627596-14628250)
               

               
               65-732, gnl|Hg17|chr16 (66956747-66956057)
               

               
               65-732, gnl|Mm7|chr8 (104859138-104858379)
               


               
               783-1104, gnl|bosTau2|chr18 (14628250-14628573)
               

               
               783-1104, gnl|Hg17|chr16 (66956057-66955538)

	65-732, gnl\|bosTau2\|chr18 (14627596-14628250)
	65-732, gnl\|Hg17\|chr16 (66956747-66956057)
	65-732, gnl\|Mm7\|chr8 (104859138-104858379)

	783-1104, gnl\|bosTau2\|chr18 (14628250-14628573)
	783-1104, gnl\|Hg17\|chr16 (66956057-66955538)