Non-Coding RNA Search

Ss1.1-Pig4-TMW8009L03.5

Sequence:


               
               CGGGCAGCTGCGCCGCCGGCGGCTGCACTCGGAAGGGCAGCCCTTCGCTTGCCCCGACTG
CGGCCTGGCATTCCAACTGAGGACCCTGCTGCGGGCCCATAGGCTTCGGCACAGTGGCGA
GAGGCCGCTCTCCTGTGGCGAGTGCGGCCGTGGCTTCGCCCACCCGTGCAAGCTGCGCGA
ACACCTGCGGGTGCATAGCGGCGAGCGGCCTTTCGGCTGCCCCGAGTGCGGCAAGAGCTT
TCGCCTAAAGGGCATTCTGAAGGCTCATGAGCGCACACACAGTCGTGAAAGGCCCTTCCG
GTGCGTGCAGTGCGGCAAGGGCTTCACGCGTCCGTCCAAGTTGGCAGAGCACCTCCGCGT
GCACAGCGGTGAGCGGCCTTTCGGCTGTCCTGACTGCGGTCGCCGCTTCCGCCTTAAGGG
GCAGCTGCGGAGCCATCAGCGGCTGCACACGGGCGAAAGGCCCTTTCCATGCCCTGACTG
TGGCAAGAGGTACCGCGTCAAGGCCGACATGAAGGCACACCGGCTGCTGCACGGCGGCCG
GATGCCCTTCTCCTGTGATTGCGGCAAAGGCTTCGCCAAGCAGTCCAAGCTCGTGGAGCA
CATCCGGACGCACACNGGCGAGAAACCCTTTCAGTGTCCACAATGCGACAAGAGCTTCCG
CTTGAAAGCACAGCTGCTCAGCCACCAGGGCCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCAGCTGCGCCGCCGGCGGCTGCACTCGGAAGGGCAGCCCTTCGCTTGCCCCGACTG
CGGCCTGGCATTCCAACTGAGGACCCTGCTGCGGGCCCATAGGCTTCGGCACAGTGGCGA
GAGGCCGCTCTCCTGTGGCGAGTGCGGCCGTGGCTTCGCCCACCCGTGCAAGCTGCGCGA
ACACCTGCGGGTGCATAGCGGCGAGCGGCCTTTCGGCTGCCCCGAGTGCGGCAAGAGCTT
TCGCCTAAAGGGCATTCTGAAGGCTCATGAGCGCACACACAGTCGTGAAAGGCCCTTCCG
GTGCGTGCAGTGCGGCAAGGGCTTCACGCGTCCGTCCAAGTTGGCAGAGCACCTCCGCGT
GCACAGCGGTGAGCGGCCTTTCGGCTGTCCTGACTGCGGTCGCCGCTTCCGCCTTAAGGG
GCAGCTGCGGAGCCATCAGCGGCTGCACACGGGCGAAAGGCCCTTTCCATGCCCTGACTG
TGGCAAGAGGTACCGCGTCAAGGCCGACATGAAGGCACACCGGCTGCTGCACGGCGGCCG
GATGCCCTTCTCCTGTGATTGCGGCAAAGGCTTCGCCAAGCAGTCCAAGCTCGTGGAGCA
CATCCGGACGCACACNGGCGAGAAACCCTTTCAGTGTCCACAATGCGACAAGAGCTTCCG
CTTGAAAGCACAGCTGCTCAGCCACCAGGGCCTGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               204-323, - strand, RNAz p=0.994691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-323, - strand, RNAz p=0.994691

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               157-222, - strand, RNAmicro p=0.987177

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               157-222, - strand, RNAmicro p=0.987177

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-484, gnl|bosTau2|chr25 (33530286-33530762)
               

               
               7-484, gnl|Hg17|chr7 (6466754-6467230)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-484, gnl|bosTau2|chr25 (33530286-33530762)
               

               
               7-484, gnl|Hg17|chr7 (6466754-6467230)

	7-484, gnl\|bosTau2\|chr25 (33530286-33530762)
	7-484, gnl\|Hg17\|chr7 (6466754-6467230)