Non-Coding RNA Search

Ss1.1-Pig4-TMW8010A22.5

Sequence:


               
               ACCTTGAATTTTAAACCAGCAGTCCATAGGGCTTTATCTTCTGCCTTTGATCATTTCTGG
CCCATATAGGAAAAAGGAATAGCAATCATTAAAATCTGAAGCCAGAGAACACTATTTTTT
ACTTAGCATTTTCTTAACCTAAAATCAAGGCGTTGAGAAGGGTTGCCTGAGATTCCTTCA
TGCTGTTATTCGGGGCTGAGTCTCTGATTGCAAATGTCATGTGAGTGCTAACATCTCCCA
CAGGCCAGAGGAACTTGATAGTTAATTATCTCCTGCCTCTTAACAAGGACACATCTGACA
TCCAGTGTTTAGCTGGAATAAGCAGCACATTGTGATGACAACACAGAAAATAGATTCCCC
TGTATCATTATAGGCAGAAAGTGTTTGGCAATTTTTTATGTATTGTTTGTGTACTGTATA
AGATAACTTAAAGAATACAAATTTTGCTATAAGGTACAAATTGCTACATGTGAATTAAAA
GAAAGTTTTCCAAATCTTGAAAAAAAGTATTTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTGAATTTTAAACCAGCAGTCCATAGGGCTTTATCTTCTGCCTTTGATCATTTCTGG
CCCATATAGGAAAAAGGAATAGCAATCATTAAAATCTGAAGCCAGAGAACACTATTTTTT
ACTTAGCATTTTCTTAACCTAAAATCAAGGCGTTGAGAAGGGTTGCCTGAGATTCCTTCA
TGCTGTTATTCGGGGCTGAGTCTCTGATTGCAAATGTCATGTGAGTGCTAACATCTCCCA
CAGGCCAGAGGAACTTGATAGTTAATTATCTCCTGCCTCTTAACAAGGACACATCTGACA
TCCAGTGTTTAGCTGGAATAAGCAGCACATTGTGATGACAACACAGAAAATAGATTCCCC
TGTATCATTATAGGCAGAAAGTGTTTGGCAATTTTTTATGTATTGTTTGTGTACTGTATA
AGATAACTTAAAGAATACAAATTTTGCTATAAGGTACAAATTGCTACATGTGAATTAAAA
GAAAGTTTTCCAAATCTTGAAAAAAAGTATTTATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               357-469, - strand, RNAz p=0.607649

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-469, - strand, RNAz p=0.607649

Aligned organism(s): 25 entry(ies)

More info

Aligned organism(s): 25 entry(ies)

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               2-500, gnl|bosTau2|chr17 (29389634-29389124)
               

               
               2-500, gnl|canFam2|chr26 (12090262-12090687)
               

               
               2-500, gnl|canFam2|chr26 (12090809-12090262)
               

               
               2-500, gnl|dasNov1|scaffold_10484 (8967-9386)
               

               
               2-500, gnl|dasNov1|scaffold_10484 (9510-8967)
               

               
               2-500, gnl|echTel1|scaffold_282889 (50490-50141)
               

               
               2-500, gnl|echTel1|scaffold_282889 (50031-50490)
               

               
               2-500, gnl|hg17|chr12 (110351617-110352023)
               

               
               2-500, gnl|Hg17|chr12 (110351649-110352147)
               

               
               2-500, gnl|hg17|chrX (107906683-107907209)
               

               
               2-500, gnl|loxAfr1|scaffold_15988 (14326-13910)
               

               
               2-500, gnl|loxAfr1|scaffold_15988 (13788-14326)
               

               
               2-500, gnl|mm7|chr5 (121050222-121049863)
               

               
               2-500, gnl|mm7|chr5 (121049749-121050222)
               

               
               2-500, gnl|Mm7|chr5 (121050188-121049761)
               

               
               2-500, gnl|monDom2|scaffold_203 (593336-592879)
               

               
               2-500, gnl|monDom2|scaffold_203 (592682-593336)
               

               
               2-500, gnl|oryCun1|scaffold_206816 (86800-86413)
               

               
               2-500, gnl|oryCun1|scaffold_206816 (86291-86800)
               

               
               2-500, gnl|panTro1|chr10 (112957477-112957883)
               

               
               2-500, gnl|panTro1|chr10 (112958008-112957477)
               

               
               2-500, gnl|rheMac2|chr11 (112391991-112392395)
               

               
               2-500, gnl|rheMac2|chrX (107600135-107600661)
               

               
               2-500, gnl|rn3|chr12 (35821349-35821717)
               

               
               2-500, gnl|rn3|chr12 (35821832-35821349)

Aligned organism(s): 25 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-500, gnl|bosTau2|chr17 (29389634-29389124)
               

               
               2-500, gnl|canFam2|chr26 (12090262-12090687)
               

               
               2-500, gnl|canFam2|chr26 (12090809-12090262)
               

               
               2-500, gnl|dasNov1|scaffold_10484 (8967-9386)
               

               
               2-500, gnl|dasNov1|scaffold_10484 (9510-8967)
               

               
               2-500, gnl|echTel1|scaffold_282889 (50490-50141)
               

               
               2-500, gnl|echTel1|scaffold_282889 (50031-50490)
               

               
               2-500, gnl|hg17|chr12 (110351617-110352023)
               

               
               2-500, gnl|Hg17|chr12 (110351649-110352147)
               

               
               2-500, gnl|hg17|chrX (107906683-107907209)
               

               
               2-500, gnl|loxAfr1|scaffold_15988 (14326-13910)
               

               
               2-500, gnl|loxAfr1|scaffold_15988 (13788-14326)
               

               
               2-500, gnl|mm7|chr5 (121050222-121049863)
               

               
               2-500, gnl|mm7|chr5 (121049749-121050222)
               

               
               2-500, gnl|Mm7|chr5 (121050188-121049761)
               

               
               2-500, gnl|monDom2|scaffold_203 (593336-592879)
               

               
               2-500, gnl|monDom2|scaffold_203 (592682-593336)
               

               
               2-500, gnl|oryCun1|scaffold_206816 (86800-86413)
               

               
               2-500, gnl|oryCun1|scaffold_206816 (86291-86800)
               

               
               2-500, gnl|panTro1|chr10 (112957477-112957883)
               

               
               2-500, gnl|panTro1|chr10 (112958008-112957477)
               

               
               2-500, gnl|rheMac2|chr11 (112391991-112392395)
               

               
               2-500, gnl|rheMac2|chrX (107600135-107600661)
               

               
               2-500, gnl|rn3|chr12 (35821349-35821717)
               

               
               2-500, gnl|rn3|chr12 (35821832-35821349)

	2-500, gnl\|bosTau2\|chr17 (29389634-29389124)
	2-500, gnl\|canFam2\|chr26 (12090262-12090687)
	2-500, gnl\|canFam2\|chr26 (12090809-12090262)
	2-500, gnl\|dasNov1\|scaffold_10484 (8967-9386)
	2-500, gnl\|dasNov1\|scaffold_10484 (9510-8967)
	2-500, gnl\|echTel1\|scaffold_282889 (50490-50141)
	2-500, gnl\|echTel1\|scaffold_282889 (50031-50490)
	2-500, gnl\|hg17\|chr12 (110351617-110352023)
	2-500, gnl\|Hg17\|chr12 (110351649-110352147)
	2-500, gnl\|hg17\|chrX (107906683-107907209)
	2-500, gnl\|loxAfr1\|scaffold_15988 (14326-13910)
	2-500, gnl\|loxAfr1\|scaffold_15988 (13788-14326)
	2-500, gnl\|mm7\|chr5 (121050222-121049863)
	2-500, gnl\|mm7\|chr5 (121049749-121050222)
	2-500, gnl\|Mm7\|chr5 (121050188-121049761)
	2-500, gnl\|monDom2\|scaffold_203 (593336-592879)
	2-500, gnl\|monDom2\|scaffold_203 (592682-593336)
	2-500, gnl\|oryCun1\|scaffold_206816 (86800-86413)
	2-500, gnl\|oryCun1\|scaffold_206816 (86291-86800)
	2-500, gnl\|panTro1\|chr10 (112957477-112957883)
	2-500, gnl\|panTro1\|chr10 (112958008-112957477)
	2-500, gnl\|rheMac2\|chr11 (112391991-112392395)
	2-500, gnl\|rheMac2\|chrX (107600135-107600661)
	2-500, gnl\|rn3\|chr12 (35821349-35821717)
	2-500, gnl\|rn3\|chr12 (35821832-35821349)