Non-Coding RNA Search

Ss1.1-Pig4-TMW8010K02.5

Sequence:


               
               GGAAGAGGACCCAACAGAGCGGACGGCCCTTCTGAGCGTGGGCCCAGATGCCATCTTCGG
CCCGGAGGGCAGCCCCTGGGAGGGCAGGCTTCGCTTCCAGAGGCTCTCCCCGCTGCTCTA
CCGGCTCACAGTGCTGCAGGCAAGTCCCCAGGACACGGGCAACTACTCTTGCCGCGTGGA
GGAGTGGCTGCCCAGCCCTCAGAAGGAGTGGTACCGGCTGACGGAGGAGGAATCAGCCCC
CATCGGCATCCGTGTTCTGGACACAAGCTCCACCCTGCAGTCCATCATCTGCTCCAACGA
CGCCCTCTTCTACTTCGTCTTCTTCTACCCCTTCCCCATCTTTGGCATCCTCATCATCAC
CATCCTGCTGGTGCGCTTCAAGAGCCGAAACTCCAGCAAGAACTCCGAGGGGAAGAACGG
GGTGCCCCTGCTGTGGATCAAGGAGCCGCACCTCAACTACTCCCCCACTTGCCTGGAGCC
CCCCGTGCTCAGTATCCACCCGGGAGCCATAGACTAACAAGGGCACCTAGCGGTCATCAG
CCACGGAGGAGCCAAGGCTCTCCCCGCTGCCTCCTGCTCTGCACCCAACCTCTGGGGCGC
TCTCGGAGAACACGCTGGGACTTGAGACGTGTTCAGAGTCGCCGATGGGTCAGAGGCCGA
CTGCCTGTAGGTGGCAGTCTTGGTTGCTTAGCTGTTTTCGAGCAGGCGGCACCATCTTGC
CGCGTTAGGTTTCCTGTTTTAGTTTTCGGTAATGTGAGTAGCTCCCGGTGGCACGTCTAC
TCGCTGGTTTATATAGTATTCTCAGATAGATGTTACAGGGGTTCTTATTCTTTGTAATAG
ACTCTTTTTCAATGCCTTTGGTTTACCCTTTTTGGATTCCATAAGAGCGTGGCCGAATTT
CTCTTAAATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAGGACCCAACAGAGCGGACGGCCCTTCTGAGCGTGGGCCCAGATGCCATCTTCGG
CCCGGAGGGCAGCCCCTGGGAGGGCAGGCTTCGCTTCCAGAGGCTCTCCCCGCTGCTCTA
CCGGCTCACAGTGCTGCAGGCAAGTCCCCAGGACACGGGCAACTACTCTTGCCGCGTGGA
GGAGTGGCTGCCCAGCCCTCAGAAGGAGTGGTACCGGCTGACGGAGGAGGAATCAGCCCC
CATCGGCATCCGTGTTCTGGACACAAGCTCCACCCTGCAGTCCATCATCTGCTCCAACGA
CGCCCTCTTCTACTTCGTCTTCTTCTACCCCTTCCCCATCTTTGGCATCCTCATCATCAC
CATCCTGCTGGTGCGCTTCAAGAGCCGAAACTCCAGCAAGAACTCCGAGGGGAAGAACGG
GGTGCCCCTGCTGTGGATCAAGGAGCCGCACCTCAACTACTCCCCCACTTGCCTGGAGCC
CCCCGTGCTCAGTATCCACCCGGGAGCCATAGACTAACAAGGGCACCTAGCGGTCATCAG
CCACGGAGGAGCCAAGGCTCTCCCCGCTGCCTCCTGCTCTGCACCCAACCTCTGGGGCGC
TCTCGGAGAACACGCTGGGACTTGAGACGTGTTCAGAGTCGCCGATGGGTCAGAGGCCGA
CTGCCTGTAGGTGGCAGTCTTGGTTGCTTAGCTGTTTTCGAGCAGGCGGCACCATCTTGC
CGCGTTAGGTTTCCTGTTTTAGTTTTCGGTAATGTGAGTAGCTCCCGGTGGCACGTCTAC
TCGCTGGTTTATATAGTATTCTCAGATAGATGTTACAGGGGTTCTTATTCTTTGTAATAG
ACTCTTTTTCAATGCCTTTGGTTTACCCTTTTTGGATTCCATAAGAGCGTGGCCGAATTT
CTCTTAAATACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-236, - strand, RNAz p=0.563078

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-236, - strand, RNAz p=0.563078

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               142-211, - strand, RNAmicro p=0.933982

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               142-211, - strand, RNAmicro p=0.933982

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-267, gnl|bosTau2|chr3 (21604081-21603815)
               

               
               1-267, gnl|Hg17|chr1 (116834321-116834055)
               

               
               1-267, gnl|Mm7|chr3 (101252657-101252926)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr3 (21604081-21603815)
               

               
               1-267, gnl|Hg17|chr1 (116834321-116834055)
               

               
               1-267, gnl|Mm7|chr3 (101252657-101252926)

	1-267, gnl\|bosTau2\|chr3 (21604081-21603815)
	1-267, gnl\|Hg17\|chr1 (116834321-116834055)
	1-267, gnl\|Mm7\|chr3 (101252657-101252926)