Non-Coding RNA Search

Ss1.1-Pig4-TMW8011B22.5

Sequence:


               
               GGGTTTCAGGCAAAGGCTGCTAGAGGTTTCAGCTGCCGTCTGGGCTCCTGGCTGCTGGAT
TATAAATACAAAGTGTACAGCCCCAAGGGGGAGGGGATTGGCGCATCTCACCCAGCTGTC
CCAGCCAGCGCCCCGCCGAGCACCCACGGACCGCATCCACCCAGCACGGCAGTTAAAGCT
GCAAAGTGAATCCTGCATTGGCAACAACGGGACCGTGCCCCCACGGGAGCTGGGCTCTGT
GGAATCCTGGTCATTTGGAGAGGTCTGAAGGGCCCCGCCATCCCCCAAGGATGCAGGACT
CAGAGAAGAACAGCCAAGATGCACCCAAGAGGCTGGTCCGACACCAGCTATCTGGGAGCA
CATGAGCAGGTGGCATTTTTGGCTCGTGCCTGAGGCCACTGAGTCACCCTGCCCTAAATC
CAACCACGTGCCACCTTCAGCCCCTTCCTTGAGGGTAACGCCTCTCACTCCTGATGTCTC
AGGCAAGCCTGGAAGACCCAGGCCCACCTGCTGGGCTCCAAGAACCACTTACCAAAGGAA
AGATCATCAGAGGCTGAAATTTAGAGCTTCATCTTGTGCAATGAGGTTCTCACAGGAGGT
GCAGTTTTATAACTACGTCCACTTATATATCTACACACTCTCTACATATATATATATATA
TATACACACACACACACACAAATGCACAGGCCCTCGCCCTACTCCCTTACCAAACTGTAT
GTCTTATCATGTTTATAAACTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTCAGGCAAAGGCTGCTAGAGGTTTCAGCTGCCGTCTGGGCTCCTGGCTGCTGGAT
TATAAATACAAAGTGTACAGCCCCAAGGGGGAGGGGATTGGCGCATCTCACCCAGCTGTC
CCAGCCAGCGCCCCGCCGAGCACCCACGGACCGCATCCACCCAGCACGGCAGTTAAAGCT
GCAAAGTGAATCCTGCATTGGCAACAACGGGACCGTGCCCCCACGGGAGCTGGGCTCTGT
GGAATCCTGGTCATTTGGAGAGGTCTGAAGGGCCCCGCCATCCCCCAAGGATGCAGGACT
CAGAGAAGAACAGCCAAGATGCACCCAAGAGGCTGGTCCGACACCAGCTATCTGGGAGCA
CATGAGCAGGTGGCATTTTTGGCTCGTGCCTGAGGCCACTGAGTCACCCTGCCCTAAATC
CAACCACGTGCCACCTTCAGCCCCTTCCTTGAGGGTAACGCCTCTCACTCCTGATGTCTC
AGGCAAGCCTGGAAGACCCAGGCCCACCTGCTGGGCTCCAAGAACCACTTACCAAAGGAA
AGATCATCAGAGGCTGAAATTTAGAGCTTCATCTTGTGCAATGAGGTTCTCACAGGAGGT
GCAGTTTTATAACTACGTCCACTTATATATCTACACACTCTCTACATATATATATATATA
TATACACACACACACACACAAATGCACAGGCCCTCGCCCTACTCCCTTACCAAACTGTAT
GTCTTATCATGTTTATAAACTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               298-535, - strand, RNAz p=0.774116

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-535, - strand, RNAz p=0.774116

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               486-585, - strand, RNAmicro p=0.993228

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               486-585, - strand, RNAmicro p=0.993228

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-666, gnl|bosTau2|chr19 (17515903-17515253)
               

               
               1-666, gnl|Hg17|chr17 (1786449-1785744)
               

               
               1-666, gnl|Mm7|chr11 (75347765-75348408)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-666, gnl|bosTau2|chr19 (17515903-17515253)
               

               
               1-666, gnl|Hg17|chr17 (1786449-1785744)
               

               
               1-666, gnl|Mm7|chr11 (75347765-75348408)

	1-666, gnl\|bosTau2\|chr19 (17515903-17515253)
	1-666, gnl\|Hg17\|chr17 (1786449-1785744)
	1-666, gnl\|Mm7\|chr11 (75347765-75348408)