Non-Coding RNA Search

Ss1.1-Pig4-TMW8011G23.5

Sequence:


               
               ATTTTTAAAGTTATTTGTGGTCCTGGGTTTGGGGAAAGAAGAGATGTGAAGAGAAATAGG
CATCCTTTAAAAAGGACTTTTTAAGTTAAAAGTATTGAATCTCTAATTAGAGAGGTGGCT
GGAGGCACCTCATGTTTTTTGAATAGTGGATCATTTCCCAAATGTAATTTCTGGGGATTA
GACATTCAGGCACACTTGCTGAAATCTGGACAAACCATAAAGGCACATATATAGTAATAG
ATAATAATAGCTATGTTTGTAGTTTCTGTTTGGTCATTTTAGTCTTGTAAAATGAAACTA
GTGGCCTGTTTAGCATTAGAATGATCTTTGATCTACTACAAACTAATTGTTGTTTCCTTG
AATAATTCCAGATCAGGGGACTTGAAGCATCATTCTTTAGAGTCCTTGGGTCTGTGTGGG
GGCTAAAGGGCTGGAAAAGGAGGAGAGAGGGAGGCCAGGCTTGTGGGGCTCCAGGCTTCT
TCCATCTACCACATCCACAGCAGCTCTGCTTTCTTCTTGCTTTGTTTTGGAGTTCTTGAA
ACTAACCAGGCAGATCAGTTAACTCAGTAGAAGGTCCTAAGCAGGGGAAGAGCTCAGCAG
CAGTAGGTGCTGTGATGCCAATCAGGCTTAAGGTTCTAGAGCCTTCAGCAGAAGAAATAT
GACTCTAAGATGAAGAGTTAGGGGACTCATAAAGGAACACATTATGATCATATTGGAAGT
TATGACAGGGTTAGATTAAACCTTGATTCAGGACTGAGTCAGAAAAACAATGAGCTATTC
TGAGATCGTTCTCTTGTTTAAAAAGCATGCTTTTCATATATCCCTGTTACGACTCCCACC
TGGTAACATTAAATGTGGTCGATCAGCCAAAACAATGAACCATTTTGGCCGCTGTTCATT
CAGTCTCTCAACAAGTGTTGTTCATTCTTTAATTTTATCCTCAAATAAATGGCTAGCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTAAAGTTATTTGTGGTCCTGGGTTTGGGGAAAGAAGAGATGTGAAGAGAAATAGG
CATCCTTTAAAAAGGACTTTTTAAGTTAAAAGTATTGAATCTCTAATTAGAGAGGTGGCT
GGAGGCACCTCATGTTTTTTGAATAGTGGATCATTTCCCAAATGTAATTTCTGGGGATTA
GACATTCAGGCACACTTGCTGAAATCTGGACAAACCATAAAGGCACATATATAGTAATAG
ATAATAATAGCTATGTTTGTAGTTTCTGTTTGGTCATTTTAGTCTTGTAAAATGAAACTA
GTGGCCTGTTTAGCATTAGAATGATCTTTGATCTACTACAAACTAATTGTTGTTTCCTTG
AATAATTCCAGATCAGGGGACTTGAAGCATCATTCTTTAGAGTCCTTGGGTCTGTGTGGG
GGCTAAAGGGCTGGAAAAGGAGGAGAGAGGGAGGCCAGGCTTGTGGGGCTCCAGGCTTCT
TCCATCTACCACATCCACAGCAGCTCTGCTTTCTTCTTGCTTTGTTTTGGAGTTCTTGAA
ACTAACCAGGCAGATCAGTTAACTCAGTAGAAGGTCCTAAGCAGGGGAAGAGCTCAGCAG
CAGTAGGTGCTGTGATGCCAATCAGGCTTAAGGTTCTAGAGCCTTCAGCAGAAGAAATAT
GACTCTAAGATGAAGAGTTAGGGGACTCATAAAGGAACACATTATGATCATATTGGAAGT
TATGACAGGGTTAGATTAAACCTTGATTCAGGACTGAGTCAGAAAAACAATGAGCTATTC
TGAGATCGTTCTCTTGTTTAAAAAGCATGCTTTTCATATATCCCTGTTACGACTCCCACC
TGGTAACATTAAATGTGGTCGATCAGCCAAAACAATGAACCATTTTGGCCGCTGTTCATT
CAGTCTCTCAACAAGTGTTGTTCATTCTTTAATTTTATCCTCAAATAAATGGCTAGCGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               572-691, - strand, RNAz p=0.987626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               572-691, - strand, RNAz p=0.987626

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-952, gnl|bosTau2|chr10 (8739959-8738997)
               

               
               1-952, gnl|Hg17|chr15 (63438572-63436915)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-952, gnl|bosTau2|chr10 (8739959-8738997)
               

               
               1-952, gnl|Hg17|chr15 (63438572-63436915)

	1-952, gnl\|bosTau2\|chr10 (8739959-8738997)
	1-952, gnl\|Hg17\|chr15 (63438572-63436915)