Non-Coding RNA Search

Ss1.1-Pig4-TMW8012C23.3

Sequence:


               
               CGACATCGCGGGCTCAGGCCTCGTGGCGGTGGTGGTCTCCACCATCGGCATCGTTATCTT
CGGGGAGATCGTACCCCAGGCCATTTGCTCCCGGCATGGCCTGGCTGTGGGGGCCAACAC
CATCTTCCTCACCAAGTTTTTCATGATGATGACCTTCCCCGCTTCTTACCCGGTCAGCAA
GCTGCTGGACTGCGTCCTGGGCCAGGAGATAGGCACCGTCTACAACCGGGAAAAACTGCT
GGAGATGCTCCGGGTCACAGATCCCTACAACGACCTCGTTAAGGAGGAGCTGAACATCAT
CCAAGGGGCGCTGGAGCTCCGCACCAAGACCGTGGAGGACGTGATGACTCCCCTCCGGGA
CTGTTTCATGATCACCGGCGAAGCCATTCTGGACTTCAACACCATGTCAGAGATCATGGA
GAGCGGTTACACTCGCATTCCAGTATTTGAGGGGGAGCGCTCCAACATCGTGGACCTCCT
CTTTGTCAAAGACTTGGCCTTCGTGGATCCAGATGACTGTACTCCCCTGAAAACCATCAC
TAAATTTTATAACCACCCCTTGCACTTTGTTTTCAATGACACCAAGTTGGACGCTATGCT
GGAAGAATTTAAGAAAGGTAAATCTCACCTGGCTATTGTGCAGCGAGTAAACAATGAGGG
AGAGGGGGATCCATTTTATGAAGTGCTGGGAATTGTCACATTAGAGGATGTGATCGAAGA
AATCATCAAGTCTGAGATTCTAGATGAAACAGATTTATACACTGATAACAGAACGAAAAA
GAAAGTGGCCCATCGAGAAAGAAAGCAAGATTTTTCCGCCTTTAAGCAGACAGACAGCGA
GATGAAGGTTAAAATATCACCACAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAGA
AGTAGAAGCATTTAGCCCATCCCAGATGTCAGAGAAGATCCTTCTAAGGCTGCTAAAGCA
CCCCAATGTCATCCAGGAACTGAAGTATGATGAGAAGAACAAGAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACATCGCGGGCTCAGGCCTCGTGGCGGTGGTGGTCTCCACCATCGGCATCGTTATCTT
CGGGGAGATCGTACCCCAGGCCATTTGCTCCCGGCATGGCCTGGCTGTGGGGGCCAACAC
CATCTTCCTCACCAAGTTTTTCATGATGATGACCTTCCCCGCTTCTTACCCGGTCAGCAA
GCTGCTGGACTGCGTCCTGGGCCAGGAGATAGGCACCGTCTACAACCGGGAAAAACTGCT
GGAGATGCTCCGGGTCACAGATCCCTACAACGACCTCGTTAAGGAGGAGCTGAACATCAT
CCAAGGGGCGCTGGAGCTCCGCACCAAGACCGTGGAGGACGTGATGACTCCCCTCCGGGA
CTGTTTCATGATCACCGGCGAAGCCATTCTGGACTTCAACACCATGTCAGAGATCATGGA
GAGCGGTTACACTCGCATTCCAGTATTTGAGGGGGAGCGCTCCAACATCGTGGACCTCCT
CTTTGTCAAAGACTTGGCCTTCGTGGATCCAGATGACTGTACTCCCCTGAAAACCATCAC
TAAATTTTATAACCACCCCTTGCACTTTGTTTTCAATGACACCAAGTTGGACGCTATGCT
GGAAGAATTTAAGAAAGGTAAATCTCACCTGGCTATTGTGCAGCGAGTAAACAATGAGGG
AGAGGGGGATCCATTTTATGAAGTGCTGGGAATTGTCACATTAGAGGATGTGATCGAAGA
AATCATCAAGTCTGAGATTCTAGATGAAACAGATTTATACACTGATAACAGAACGAAAAA
GAAAGTGGCCCATCGAGAAAGAAAGCAAGATTTTTCCGCCTTTAAGCAGACAGACAGCGA
GATGAAGGTTAAAATATCACCACAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAGA
AGTAGAAGCATTTAGCCCATCCCAGATGTCAGAGAAGATCCTTCTAAGGCTGCTAAAGCA
CCCCAATGTCATCCAGGAACTGAAGTATGATGAGAAGAACAAGAAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61834831|ref|XP_615575.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61834831|ref|XP_615575.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               50-169, + strand, RNAz p=0.695776

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-169, + strand, RNAz p=0.695776

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC063295, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC063295, +

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               11-621, gnl|bosTau2|chr11 (3541617-3541007)
               

               
               11-621, gnl|Hg17|chr2 (96849406-96850016)
               

               
               11-621, gnl|Mm7|chr1 (36713860-36714470)
               


               
               762-899, gnl|bosTau2|chr26 (17468876-17469013)
               

               
               762-899, gnl|canFam2|chr28 (18494274-18494454)
               

               
               762-899, gnl|danRer3|chr13 (28968077-28967894)
               

               
               762-899, gnl|dasNov1|scaffold_1510 (9378-9558)
               

               
               762-899, gnl|echTel1|scaffold_316991 (89086-88906)
               

               
               762-899, gnl|fr1|chrUn (164430895-164431066)
               

               
               762-899, gnl|galGal2|chr6 (22551557-22551736)
               

               
               762-899, gnl|hg17|chr10 (104804065-104804245)
               

               
               762-899, gnl|Hg17|chr10 (104804076-104804213)
               

               
               762-899, gnl|loxAfr1|scaffold_31947 (5391-5237)
               

               
               762-899, gnl|mm7|chr19 (46757322-46757499)
               

               
               762-899, gnl|Mm7|chr19 (46757333-46757470)
               

               
               762-899, gnl|monDom2|scaffold_14 (60244407-60244229)
               

               
               762-899, gnl|oryCun1|scaffold_122898 (261-82)
               

               
               762-899, gnl|panTro1|chr8 (106568911-106569091)
               

               
               762-899, gnl|rheMac2|chr9 (102740390-102740570)
               

               
               762-899, gnl|rn3|chr1 (252437239-252437416)
               

               
               762-899, gnl|tetNig1|chr18 (5033003-5032832)
               

               
               762-899, gnl|xenTro1|scaffold_87 (1122129-1122300)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-621, gnl|bosTau2|chr11 (3541617-3541007)
               

               
               11-621, gnl|Hg17|chr2 (96849406-96850016)
               

               
               11-621, gnl|Mm7|chr1 (36713860-36714470)
               


               
               762-899, gnl|bosTau2|chr26 (17468876-17469013)
               

               
               762-899, gnl|canFam2|chr28 (18494274-18494454)
               

               
               762-899, gnl|danRer3|chr13 (28968077-28967894)
               

               
               762-899, gnl|dasNov1|scaffold_1510 (9378-9558)
               

               
               762-899, gnl|echTel1|scaffold_316991 (89086-88906)
               

               
               762-899, gnl|fr1|chrUn (164430895-164431066)
               

               
               762-899, gnl|galGal2|chr6 (22551557-22551736)
               

               
               762-899, gnl|hg17|chr10 (104804065-104804245)
               

               
               762-899, gnl|Hg17|chr10 (104804076-104804213)
               

               
               762-899, gnl|loxAfr1|scaffold_31947 (5391-5237)
               

               
               762-899, gnl|mm7|chr19 (46757322-46757499)
               

               
               762-899, gnl|Mm7|chr19 (46757333-46757470)
               

               
               762-899, gnl|monDom2|scaffold_14 (60244407-60244229)
               

               
               762-899, gnl|oryCun1|scaffold_122898 (261-82)
               

               
               762-899, gnl|panTro1|chr8 (106568911-106569091)
               

               
               762-899, gnl|rheMac2|chr9 (102740390-102740570)
               

               
               762-899, gnl|rn3|chr1 (252437239-252437416)
               

               
               762-899, gnl|tetNig1|chr18 (5033003-5032832)
               

               
               762-899, gnl|xenTro1|scaffold_87 (1122129-1122300)

	11-621, gnl\|bosTau2\|chr11 (3541617-3541007)
	11-621, gnl\|Hg17\|chr2 (96849406-96850016)
	11-621, gnl\|Mm7\|chr1 (36713860-36714470)

	762-899, gnl\|bosTau2\|chr26 (17468876-17469013)
	762-899, gnl\|canFam2\|chr28 (18494274-18494454)
	762-899, gnl\|danRer3\|chr13 (28968077-28967894)
	762-899, gnl\|dasNov1\|scaffold_1510 (9378-9558)
	762-899, gnl\|echTel1\|scaffold_316991 (89086-88906)
	762-899, gnl\|fr1\|chrUn (164430895-164431066)
	762-899, gnl\|galGal2\|chr6 (22551557-22551736)
	762-899, gnl\|hg17\|chr10 (104804065-104804245)
	762-899, gnl\|Hg17\|chr10 (104804076-104804213)
	762-899, gnl\|loxAfr1\|scaffold_31947 (5391-5237)
	762-899, gnl\|mm7\|chr19 (46757322-46757499)
	762-899, gnl\|Mm7\|chr19 (46757333-46757470)
	762-899, gnl\|monDom2\|scaffold_14 (60244407-60244229)
	762-899, gnl\|oryCun1\|scaffold_122898 (261-82)
	762-899, gnl\|panTro1\|chr8 (106568911-106569091)
	762-899, gnl\|rheMac2\|chr9 (102740390-102740570)
	762-899, gnl\|rn3\|chr1 (252437239-252437416)
	762-899, gnl\|tetNig1\|chr18 (5033003-5032832)
	762-899, gnl\|xenTro1\|scaffold_87 (1122129-1122300)