Non-Coding RNA Search

Ss1.1-Pig4-TMW8012G13.5

Sequence:


               
               CGCTGACGGCCACCGACGGCCTCCGAGGCGTCCGCCGGAACTCCTCCTTCAGCACTGCCC
GCTCAGCGGCTGCAGAGGCCAAGGGCCGCCTGGCCGAACGGGCCGCCAGCCAGGGCTCGG
ACCCCCCTCTTCTGCCCACCCAACGCAACGGCATCCCTGTGTCCCCTGTGCGCCCCAAGC
CCATTGAGAAATCGCAGTTCATCCACAACAACCTCAAAGATGTGTACGTCTCGATCTCAG
ACTACGAGGGGGACGAGGAGACGGCGGGCTTCCAGGAGGGCGTGTCCATGGAGGTCCTGG
AGAGGAACCCCAACGGCTGGTGGTACTGCCAGATCCTGGATGGGGTGAAACCCTTCAAAG
GCTGGGTGCCCTCCAACTACCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGACGGCCACCGACGGCCTCCGAGGCGTCCGCCGGAACTCCTCCTTCAGCACTGCCC
GCTCAGCGGCTGCAGAGGCCAAGGGCCGCCTGGCCGAACGGGCCGCCAGCCAGGGCTCGG
ACCCCCCTCTTCTGCCCACCCAACGCAACGGCATCCCTGTGTCCCCTGTGCGCCCCAAGC
CCATTGAGAAATCGCAGTTCATCCACAACAACCTCAAAGATGTGTACGTCTCGATCTCAG
ACTACGAGGGGGACGAGGAGACGGCGGGCTTCCAGGAGGGCGTGTCCATGGAGGTCCTGG
AGAGGAACCCCAACGGCTGGTGGTACTGCCAGATCCTGGATGGGGTGAAACCCTTCAAAG
GCTGGGTGCCCTCCAACTACCTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-384, - strand, RNAz p=0.929597

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-384, - strand, RNAz p=0.929597

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-384, gnl|bosTau2|chr26 (15823518-15823901)
               

               
               1-384, gnl|canFam2|chr28 (18946585-18947132)
               

               
               1-384, gnl|danRer3|chr1 (45918515-45919089)
               

               
               1-384, gnl|dasNov1|scaffold_25247 (12227-12774)
               

               
               1-384, gnl|echTel1|scaffold_162566 (596-51)
               

               
               1-384, gnl|fr1|chrUn (8868707-8869259)
               

               
               1-384, gnl|galGal2|chr6 (22878205-22878749)
               

               
               1-384, gnl|hg17|chr10 (105351562-105352109)
               

               
               1-384, gnl|Hg17|chr10 (105351960-105351577)
               

               
               1-384, gnl|loxAfr1|scaffold_18125 (18594-18047)
               

               
               1-384, gnl|mm7|chr19 (47167483-47168030)
               

               
               1-384, gnl|Mm7|chr19 (47167881-47167498)
               

               
               1-384, gnl|monDom2|scaffold_14 (59695048-59694495)
               

               
               1-384, gnl|oryCun1|scaffold_204584 (10899-11446)
               

               
               1-384, gnl|panTro1|chr8 (107130826-107131373)
               

               
               1-384, gnl|rheMac2|chr9 (103299593-103300140)
               

               
               1-384, gnl|rn3|chr1 (252865782-252866329)
               

               
               1-384, gnl|tetNig1|chr17 (6909859-6909306)
               

               
               1-384, gnl|xenTro1|scaffold_233 (319100-319657)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr26 (15823518-15823901)
               

               
               1-384, gnl|canFam2|chr28 (18946585-18947132)
               

               
               1-384, gnl|danRer3|chr1 (45918515-45919089)
               

               
               1-384, gnl|dasNov1|scaffold_25247 (12227-12774)
               

               
               1-384, gnl|echTel1|scaffold_162566 (596-51)
               

               
               1-384, gnl|fr1|chrUn (8868707-8869259)
               

               
               1-384, gnl|galGal2|chr6 (22878205-22878749)
               

               
               1-384, gnl|hg17|chr10 (105351562-105352109)
               

               
               1-384, gnl|Hg17|chr10 (105351960-105351577)
               

               
               1-384, gnl|loxAfr1|scaffold_18125 (18594-18047)
               

               
               1-384, gnl|mm7|chr19 (47167483-47168030)
               

               
               1-384, gnl|Mm7|chr19 (47167881-47167498)
               

               
               1-384, gnl|monDom2|scaffold_14 (59695048-59694495)
               

               
               1-384, gnl|oryCun1|scaffold_204584 (10899-11446)
               

               
               1-384, gnl|panTro1|chr8 (107130826-107131373)
               

               
               1-384, gnl|rheMac2|chr9 (103299593-103300140)
               

               
               1-384, gnl|rn3|chr1 (252865782-252866329)
               

               
               1-384, gnl|tetNig1|chr17 (6909859-6909306)
               

               
               1-384, gnl|xenTro1|scaffold_233 (319100-319657)

	1-384, gnl\|bosTau2\|chr26 (15823518-15823901)
	1-384, gnl\|canFam2\|chr28 (18946585-18947132)
	1-384, gnl\|danRer3\|chr1 (45918515-45919089)
	1-384, gnl\|dasNov1\|scaffold_25247 (12227-12774)
	1-384, gnl\|echTel1\|scaffold_162566 (596-51)
	1-384, gnl\|fr1\|chrUn (8868707-8869259)
	1-384, gnl\|galGal2\|chr6 (22878205-22878749)
	1-384, gnl\|hg17\|chr10 (105351562-105352109)
	1-384, gnl\|Hg17\|chr10 (105351960-105351577)
	1-384, gnl\|loxAfr1\|scaffold_18125 (18594-18047)
	1-384, gnl\|mm7\|chr19 (47167483-47168030)
	1-384, gnl\|Mm7\|chr19 (47167881-47167498)
	1-384, gnl\|monDom2\|scaffold_14 (59695048-59694495)
	1-384, gnl\|oryCun1\|scaffold_204584 (10899-11446)
	1-384, gnl\|panTro1\|chr8 (107130826-107131373)
	1-384, gnl\|rheMac2\|chr9 (103299593-103300140)
	1-384, gnl\|rn3\|chr1 (252865782-252866329)
	1-384, gnl\|tetNig1\|chr17 (6909859-6909306)
	1-384, gnl\|xenTro1\|scaffold_233 (319100-319657)